Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13CQ709C8 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VPS13CQ709C8 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13CQ709C8 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13CQ709C8 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.47□□□□□ -0.09
VPS13CQ709C8 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13CQ709C8 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13CQ709C8 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13CQ709C8 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13CQ709C8 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13CQ709C8 AC012317.2-201ENST00000623305 2251 ntBASIC14.47□□□□□ -0.09
VPS13CQ709C8 AC093677.2-201ENST00000600169 1863 ntBASIC14.46□□□□□ -0.09
VPS13CQ709C8 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 PTCHD3P3-201ENST00000403073 906 ntBASIC14.46□□□□□ -0.09
VPS13CQ709C8 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 AC243562.1-201ENST00000560672 389 ntBASIC14.46□□□□□ -0.09
VPS13CQ709C8 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 TFAMP1-201ENST00000412727 736 ntBASIC14.46□□□□□ -0.09
VPS13CQ709C8 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 LINC01225-203ENST00000563550 1244 ntBASIC14.46□□□□□ -0.09
VPS13CQ709C8 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 AL033527.4-201ENST00000641026 673 ntBASIC14.46□□□□□ -0.09
VPS13CQ709C8 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS13CQ709C8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13CQ709C8 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC14.46□□□□□ -0.1
VPS13CQ709C8 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.46□□□□□ -0.1
VPS13CQ709C8 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13CQ709C8 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13CQ709C8 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13CQ709C8 SPTLC1P1-201ENST00000447199 261 ntBASIC14.46□□□□□ -0.1
VPS13CQ709C8 AC125807.1-201ENST00000483097 614 ntBASIC14.46□□□□□ -0.1
VPS13CQ709C8 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.46□□□□□ -0.1
VPS13CQ709C8 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.46□□□□□ -0.1
VPS13CQ709C8 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.46□□□□□ -0.1
VPS13CQ709C8 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13CQ709C8 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 TREML5P-201ENST00000421694 576 ntBASIC14.45□□□□□ -0.1
VPS13CQ709C8 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 AL596325.1-201ENST00000563991 1082 ntBASIC14.45□□□□□ -0.1
VPS13CQ709C8 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 AC003669.1-201ENST00000334569 611 ntBASIC14.45□□□□□ -0.1
VPS13CQ709C8 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 SPDYE22P-201ENST00000582158 798 ntBASIC14.45□□□□□ -0.1
VPS13CQ709C8 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 AP001059.3-201ENST00000619053 235 ntBASIC14.45□□□□□ -0.1
VPS13CQ709C8 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13CQ709C8 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.45□□□□□ -0.1
VPS13CQ709C8 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
VPS13CQ709C8 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms