Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL591684.3-201ENST00000605187 298 ntBASIC16.64■□□□□ 0.25
LIM2P55344 AL121772.3-201ENST00000610840 674 ntBASIC16.64■□□□□ 0.25
LIM2P55344 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.64■□□□□ 0.25
LIM2P55344 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.64■□□□□ 0.25
LIM2P55344 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIM2P55344 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.64■□□□□ 0.25
LIM2P55344 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.64■□□□□ 0.25
LIM2P55344 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIM2P55344 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
LIM2P55344 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LIM2P55344 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.63■□□□□ 0.25
LIM2P55344 KRT18P31-201ENST00000506277 1292 ntBASIC16.63■□□□□ 0.25
LIM2P55344 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.63■□□□□ 0.25
LIM2P55344 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.63■□□□□ 0.25
LIM2P55344 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.63■□□□□ 0.25
LIM2P55344 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LIM2P55344 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
LIM2P55344 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIM2P55344 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 KRT8P10-201ENST00000450021 1447 ntBASIC16.62■□□□□ 0.25
LIM2P55344 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.62■□□□□ 0.25
LIM2P55344 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LIM2P55344 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.62■□□□□ 0.25
LIM2P55344 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.62■□□□□ 0.25
LIM2P55344 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.62■□□□□ 0.25
LIM2P55344 IGHV3-52-201ENST00000519770 353 ntBASIC16.62■□□□□ 0.25
LIM2P55344 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.62■□□□□ 0.25
LIM2P55344 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.62■□□□□ 0.25
LIM2P55344 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIM2P55344 AL732292.2-201ENST00000609649 430 ntBASIC16.62■□□□□ 0.25
LIM2P55344 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.62■□□□□ 0.25
LIM2P55344 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIM2P55344 AD001527.2-201ENST00000622994 785 ntBASIC16.62■□□□□ 0.25
LIM2P55344 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 AC099398.1-201ENST00000567919 2776 ntBASIC16.62■□□□□ 0.25
LIM2P55344 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.62■□□□□ 0.25
LIM2P55344 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIM2P55344 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.61■□□□□ 0.25
LIM2P55344 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 AL353593.2-201ENST00000602529 1483 ntBASIC16.61■□□□□ 0.25
LIM2P55344 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms