Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AL845331.1-201ENST00000424978 1190 ntBASIC17.02■□□□□ 0.32
HNF4AP41235 TOB2P1-201ENST00000469761 992 ntBASIC17.02■□□□□ 0.32
HNF4AP41235 AC002558.1-201ENST00000488906 803 ntBASIC17.02■□□□□ 0.32
HNF4AP41235 AC091607.1-201ENST00000490318 1060 ntBASIC17.02■□□□□ 0.32
HNF4AP41235 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.02■□□□□ 0.32
HNF4AP41235 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HNF4AP41235 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
HNF4AP41235 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HNF4AP41235 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HNF4AP41235 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
HNF4AP41235 AC010460.3-201ENST00000511359 1579 ntBASIC17.02■□□□□ 0.31
HNF4AP41235 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.01■□□□□ 0.31
HNF4AP41235 AC099398.1-201ENST00000567919 2776 ntBASIC17.01■□□□□ 0.31
HNF4AP41235 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.01■□□□□ 0.31
HNF4AP41235 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.01■□□□□ 0.31
HNF4AP41235 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.01■□□□□ 0.31
HNF4AP41235 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.01■□□□□ 0.31
HNF4AP41235 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
HNF4AP41235 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HNF4AP41235 AC246785.2-201ENST00000432512 513 ntBASIC17.01■□□□□ 0.31
HNF4AP41235 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HNF4AP41235 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.01■□□□□ 0.31
HNF4AP41235 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.01■□□□□ 0.31
HNF4AP41235 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.01■□□□□ 0.31
HNF4AP41235 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.01■□□□□ 0.31
HNF4AP41235 AP000867.3-201ENST00000524675 377 ntBASIC17.01■□□□□ 0.31
HNF4AP41235 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.01■□□□□ 0.31
HNF4AP41235 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.01■□□□□ 0.31
HNF4AP41235 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.01■□□□□ 0.31
HNF4AP41235 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.01■□□□□ 0.31
HNF4AP41235 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HNF4AP41235 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 AC125634.1-201ENST00000438758 1403 ntBASIC17.01■□□□□ 0.31
HNF4AP41235 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.01■□□□□ 0.31
HNF4AP41235 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HNF4AP41235 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17■□□□□ 0.31
HNF4AP41235 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17■□□□□ 0.31
HNF4AP41235 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17■□□□□ 0.31
HNF4AP41235 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
HNF4AP41235 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
HNF4AP41235 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17■□□□□ 0.31
HNF4AP41235 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
HNF4AP41235 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17■□□□□ 0.31
HNF4AP41235 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
HNF4AP41235 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17■□□□□ 0.31
HNF4AP41235 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17■□□□□ 0.31
HNF4AP41235 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17■□□□□ 0.31
HNF4AP41235 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17■□□□□ 0.31
HNF4AP41235 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 TPSP2-201ENST00000561760 610 ntBASIC17■□□□□ 0.31
HNF4AP41235 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17■□□□□ 0.31
HNF4AP41235 AC092329.2-201ENST00000598402 547 ntBASIC17■□□□□ 0.31
HNF4AP41235 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17■□□□□ 0.31
HNF4AP41235 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17■□□□□ 0.31
HNF4AP41235 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
HNF4AP41235 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HNF4AP41235 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HNF4AP41235 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HNF4AP41235 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.99■□□□□ 0.31
HNF4AP41235 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.99■□□□□ 0.31
HNF4AP41235 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HNF4AP41235 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HNF4AP41235 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HNF4AP41235 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HNF4AP41235 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.99■□□□□ 0.31
HNF4AP41235 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HNF4AP41235 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.99■□□□□ 0.31
HNF4AP41235 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HNF4AP41235 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HNF4AP41235 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HNF4AP41235 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms