Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
MSX2P35548 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.77■□□□□ 0.28
MSX2P35548 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
MSX2P35548 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.77■□□□□ 0.28
MSX2P35548 AC116407.2-201ENST00000613639 860 ntBASIC16.77■□□□□ 0.28
MSX2P35548 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
MSX2P35548 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSX2P35548 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.77■□□□□ 0.27
MSX2P35548 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSX2P35548 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSX2P35548 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.77■□□□□ 0.27
MSX2P35548 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.77■□□□□ 0.27
MSX2P35548 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.77■□□□□ 0.27
MSX2P35548 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
MSX2P35548 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.76■□□□□ 0.27
MSX2P35548 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 AC006449.5-201ENST00000610658 2098 ntBASIC16.76■□□□□ 0.27
MSX2P35548 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
MSX2P35548 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
MSX2P35548 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.76■□□□□ 0.27
MSX2P35548 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
MSX2P35548 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
MSX2P35548 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.76■□□□□ 0.27
MSX2P35548 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.76■□□□□ 0.27
MSX2P35548 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.76■□□□□ 0.27
MSX2P35548 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.76■□□□□ 0.27
MSX2P35548 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.76■□□□□ 0.27
MSX2P35548 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.76■□□□□ 0.27
MSX2P35548 MIR3180-4-201ENST00000582223 153 ntBASIC16.76■□□□□ 0.27
MSX2P35548 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
MSX2P35548 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
MSX2P35548 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.76■□□□□ 0.27
MSX2P35548 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.76■□□□□ 0.27
MSX2P35548 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
MSX2P35548 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
MSX2P35548 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
MSX2P35548 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.76■□□□□ 0.27
MSX2P35548 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.76■□□□□ 0.27
MSX2P35548 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX2P35548 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.76■□□□□ 0.27
MSX2P35548 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.76■□□□□ 0.27
MSX2P35548 AC068418.2-201ENST00000577309 3703 ntBASIC16.75■□□□□ 0.27
MSX2P35548 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.75■□□□□ 0.27
MSX2P35548 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 NUDT16P1-203ENST00000513809 620 ntBASIC16.75■□□□□ 0.27
MSX2P35548 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.75■□□□□ 0.27
MSX2P35548 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.75■□□□□ 0.27
MSX2P35548 AL023803.3-201ENST00000615559 522 ntBASIC16.75■□□□□ 0.27
MSX2P35548 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 KRT8P47-201ENST00000604727 1398 ntBASIC16.75■□□□□ 0.27
MSX2P35548 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.75■□□□□ 0.27
MSX2P35548 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX2P35548 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
MSX2P35548 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
MSX2P35548 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms