Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CDH3P22223 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.2■□□□□ 0.34
CDH3P22223 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.2■□□□□ 0.34
CDH3P22223 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.2■□□□□ 0.34
CDH3P22223 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
CDH3P22223 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.2■□□□□ 0.34
CDH3P22223 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.2■□□□□ 0.34
CDH3P22223 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 MIR5100-201ENST00000579544 119 ntBASIC17.2■□□□□ 0.34
CDH3P22223 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CDH3P22223 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CDH3P22223 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH3P22223 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH3P22223 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CDH3P22223 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CDH3P22223 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH3P22223 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH3P22223 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.19■□□□□ 0.34
CDH3P22223 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH3P22223 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 RCN1P2-201ENST00000398357 915 ntBASIC17.19■□□□□ 0.34
CDH3P22223 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 AC026396.1-201ENST00000419388 421 ntBASIC17.19■□□□□ 0.34
CDH3P22223 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH3P22223 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH3P22223 DUTP2-201ENST00000519164 463 ntBASIC17.19■□□□□ 0.34
CDH3P22223 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.19■□□□□ 0.34
CDH3P22223 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.19■□□□□ 0.34
CDH3P22223 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CDH3P22223 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.19■□□□□ 0.34
CDH3P22223 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
CDH3P22223 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH3P22223 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CDH3P22223 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.34
CDH3P22223 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH3P22223 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDH3P22223 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH3P22223 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH3P22223 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
CDH3P22223 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH3P22223 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH3P22223 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CDH3P22223 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CDH3P22223 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.18■□□□□ 0.34
CDH3P22223 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.18■□□□□ 0.34
CDH3P22223 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.18■□□□□ 0.34
CDH3P22223 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.18■□□□□ 0.34
CDH3P22223 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
CDH3P22223 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
CDH3P22223 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.18■□□□□ 0.34
CDH3P22223 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.18■□□□□ 0.34
CDH3P22223 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.18■□□□□ 0.34
CDH3P22223 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.18■□□□□ 0.34
CDH3P22223 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CDH3P22223 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
CDH3P22223 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms