Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL9A1P20849 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 AC138969.3-201ENST00000546612 1459 ntBASIC17.9■□□□□ 0.46
COL9A1P20849 AC138932.2-201ENST00000548268 1459 ntBASIC17.9■□□□□ 0.46
COL9A1P20849 AC126755.4-201ENST00000549796 1459 ntBASIC17.9■□□□□ 0.46
COL9A1P20849 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
COL9A1P20849 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.9■□□□□ 0.46
COL9A1P20849 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.9■□□□□ 0.46
COL9A1P20849 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.9■□□□□ 0.46
COL9A1P20849 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL9A1P20849 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.9■□□□□ 0.46
COL9A1P20849 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC17.9■□□□□ 0.46
COL9A1P20849 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.9■□□□□ 0.46
COL9A1P20849 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
COL9A1P20849 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.9■□□□□ 0.46
COL9A1P20849 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.9■□□□□ 0.46
COL9A1P20849 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.9■□□□□ 0.46
COL9A1P20849 AP001059.3-201ENST00000619053 235 ntBASIC17.9■□□□□ 0.46
COL9A1P20849 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.9■□□□□ 0.46
COL9A1P20849 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.9■□□□□ 0.46
COL9A1P20849 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.9■□□□□ 0.46
COL9A1P20849 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.9■□□□□ 0.46
COL9A1P20849 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.9■□□□□ 0.46
COL9A1P20849 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
COL9A1P20849 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
COL9A1P20849 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.9■□□□□ 0.46
COL9A1P20849 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL9A1P20849 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL9A1P20849 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.89■□□□□ 0.46
COL9A1P20849 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL9A1P20849 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL9A1P20849 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.89■□□□□ 0.45
COL9A1P20849 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL9A1P20849 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL9A1P20849 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL9A1P20849 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
COL9A1P20849 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.89■□□□□ 0.45
COL9A1P20849 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.89■□□□□ 0.45
COL9A1P20849 AC112492.5-201ENST00000421897 457 ntBASIC17.89■□□□□ 0.45
COL9A1P20849 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.89■□□□□ 0.45
COL9A1P20849 RAB43P1-201ENST00000561790 589 ntBASIC17.89■□□□□ 0.45
COL9A1P20849 AC068137.2-201ENST00000605408 478 ntBASIC17.89■□□□□ 0.45
COL9A1P20849 AL158211.3-201ENST00000607385 239 ntBASIC17.89■□□□□ 0.45
COL9A1P20849 AC004706.3-202ENST00000621574 984 ntBASIC17.89■□□□□ 0.45
COL9A1P20849 AC073592.4-201ENST00000623827 446 ntBASIC17.89■□□□□ 0.45
COL9A1P20849 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.89■□□□□ 0.45
COL9A1P20849 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL9A1P20849 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL9A1P20849 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL9A1P20849 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL9A1P20849 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL9A1P20849 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
COL9A1P20849 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL9A1P20849 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL9A1P20849 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL9A1P20849 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
COL9A1P20849 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.88■□□□□ 0.45
COL9A1P20849 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.88■□□□□ 0.45
COL9A1P20849 AC022210.1-201ENST00000449856 793 ntBASIC17.88■□□□□ 0.45
COL9A1P20849 PRYP5-201ENST00000451909 266 ntBASIC17.88■□□□□ 0.45
COL9A1P20849 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.88■□□□□ 0.45
COL9A1P20849 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.88■□□□□ 0.45
COL9A1P20849 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.88■□□□□ 0.45
COL9A1P20849 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.88■□□□□ 0.45
COL9A1P20849 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.88■□□□□ 0.45
COL9A1P20849 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.88■□□□□ 0.45
COL9A1P20849 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 SIRPAP1-201ENST00000448467 1770 ntBASIC17.88■□□□□ 0.45
COL9A1P20849 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL9A1P20849 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
COL9A1P20849 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms