Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RTN3O95197 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.48■□□□□ 0.55
RTN3O95197 SPDYE21P-201ENST00000413323 827 ntBASIC18.48■□□□□ 0.55
RTN3O95197 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.48■□□□□ 0.55
RTN3O95197 AC002558.1-201ENST00000488906 803 ntBASIC18.48■□□□□ 0.55
RTN3O95197 RNA5SP419-201ENST00000515908 135 ntBASIC18.48■□□□□ 0.55
RTN3O95197 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.48■□□□□ 0.55
RTN3O95197 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
RTN3O95197 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.48■□□□□ 0.55
RTN3O95197 AC109462.3-201ENST00000573934 613 ntBASIC18.48■□□□□ 0.55
RTN3O95197 AC148477.8-201ENST00000624298 468 ntBASIC18.48■□□□□ 0.55
RTN3O95197 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RTN3O95197 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RTN3O95197 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.47■□□□□ 0.55
RTN3O95197 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.47■□□□□ 0.55
RTN3O95197 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.47■□□□□ 0.55
RTN3O95197 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
RTN3O95197 AC003669.1-201ENST00000334569 611 ntBASIC18.47■□□□□ 0.55
RTN3O95197 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.47■□□□□ 0.55
RTN3O95197 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.47■□□□□ 0.55
RTN3O95197 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.47■□□□□ 0.55
RTN3O95197 MTDHP4-201ENST00000600287 670 ntBASIC18.47■□□□□ 0.55
RTN3O95197 AL022326.1-202ENST00000641533 845 ntBASIC18.47■□□□□ 0.55
RTN3O95197 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.47■□□□□ 0.55
RTN3O95197 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.47■□□□□ 0.55
RTN3O95197 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
RTN3O95197 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RTN3O95197 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
RTN3O95197 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.47■□□□□ 0.55
RTN3O95197 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTN3O95197 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.46■□□□□ 0.55
RTN3O95197 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.46■□□□□ 0.55
RTN3O95197 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.46■□□□□ 0.55
RTN3O95197 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.46■□□□□ 0.55
RTN3O95197 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RTN3O95197 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.46■□□□□ 0.55
RTN3O95197 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
RTN3O95197 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 MYCLP1-201ENST00000372451 1075 ntBASIC18.46■□□□□ 0.55
RTN3O95197 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RTN3O95197 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RTN3O95197 KLF4P1-201ENST00000412782 1185 ntBASIC18.46■□□□□ 0.55
RTN3O95197 AL020989.1-201ENST00000422979 469 ntBASIC18.46■□□□□ 0.55
RTN3O95197 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.46■□□□□ 0.55
RTN3O95197 PRYP5-201ENST00000451909 266 ntBASIC18.46■□□□□ 0.55
RTN3O95197 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.46■□□□□ 0.55
RTN3O95197 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
RTN3O95197 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.46■□□□□ 0.55
RTN3O95197 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.46■□□□□ 0.55
RTN3O95197 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RTN3O95197 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
RTN3O95197 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
RTN3O95197 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
RTN3O95197 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RTN3O95197 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
RTN3O95197 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RTN3O95197 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RTN3O95197 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms