Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC002310.6-201ENST00000624451 1377 ntBASIC17.11■□□□□ 0.33
SDC3O75056 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.11■□□□□ 0.33
SDC3O75056 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.11■□□□□ 0.33
SDC3O75056 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.1■□□□□ 0.33
SDC3O75056 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
SDC3O75056 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SDC3O75056 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.1■□□□□ 0.33
SDC3O75056 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SDC3O75056 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.1■□□□□ 0.33
SDC3O75056 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.1■□□□□ 0.33
SDC3O75056 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.1■□□□□ 0.33
SDC3O75056 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
SDC3O75056 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.1■□□□□ 0.33
SDC3O75056 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
SDC3O75056 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.1■□□□□ 0.33
SDC3O75056 MIR4469-201ENST00000583919 79 ntBASIC17.1■□□□□ 0.33
SDC3O75056 STK25P1-201ENST00000585406 838 ntBASIC17.1■□□□□ 0.33
SDC3O75056 AL078644.1-201ENST00000609881 752 ntBASIC17.1■□□□□ 0.33
SDC3O75056 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SDC3O75056 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SDC3O75056 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.1■□□□□ 0.33
SDC3O75056 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC3O75056 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
SDC3O75056 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.09■□□□□ 0.33
SDC3O75056 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SDC3O75056 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SDC3O75056 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SDC3O75056 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.09■□□□□ 0.33
SDC3O75056 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.09■□□□□ 0.33
SDC3O75056 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
SDC3O75056 HCG4B-203ENST00000450128 991 ntBASIC17.09■□□□□ 0.33
SDC3O75056 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.09■□□□□ 0.33
SDC3O75056 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.09■□□□□ 0.33
SDC3O75056 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.09■□□□□ 0.33
SDC3O75056 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.09■□□□□ 0.33
SDC3O75056 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.09■□□□□ 0.33
SDC3O75056 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SDC3O75056 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC3O75056 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
SDC3O75056 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC3O75056 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.08■□□□□ 0.33
SDC3O75056 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC3O75056 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.08■□□□□ 0.33
SDC3O75056 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC3O75056 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
SDC3O75056 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
SDC3O75056 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC3O75056 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SDC3O75056 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
SDC3O75056 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC3O75056 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC3O75056 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.08■□□□□ 0.33
SDC3O75056 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.08■□□□□ 0.33
SDC3O75056 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
SDC3O75056 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
SDC3O75056 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.08■□□□□ 0.32
SDC3O75056 GPR89P-201ENST00000407924 1495 ntBASIC17.08■□□□□ 0.32
SDC3O75056 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SDC3O75056 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.08■□□□□ 0.32
SDC3O75056 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SDC3O75056 PTCHD3P3-201ENST00000403073 906 ntBASIC17.08■□□□□ 0.32
SDC3O75056 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.08■□□□□ 0.32
SDC3O75056 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms