Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC14.09□□□□□ -0.15
HOXA3O43365 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 AC073621.1-201ENST00000392730 636 ntBASIC14.09□□□□□ -0.15
HOXA3O43365 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA3O43365 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXA3O43365 UPF3AP3-201ENST00000420996 769 ntBASIC14.09□□□□□ -0.15
HOXA3O43365 AC108751.1-201ENST00000490852 363 ntBASIC14.09□□□□□ -0.15
HOXA3O43365 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA3O43365 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXA3O43365 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.09□□□□□ -0.15
HOXA3O43365 AL589182.2-201ENST00000619332 1049 ntBASIC14.09□□□□□ -0.15
HOXA3O43365 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 AL353593.2-201ENST00000602529 1483 ntBASIC14.09□□□□□ -0.15
HOXA3O43365 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXA3O43365 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
HOXA3O43365 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HOXA3O43365 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXA3O43365 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.08□□□□□ -0.15
HOXA3O43365 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXA3O43365 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
HOXA3O43365 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
HOXA3O43365 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC14.08□□□□□ -0.15
HOXA3O43365 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXA3O43365 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXA3O43365 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXA3O43365 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HOXA3O43365 KLF4P1-201ENST00000412782 1185 ntBASIC14.08□□□□□ -0.16
HOXA3O43365 DNAJB3-201ENST00000446806 729 ntBASIC14.08□□□□□ -0.16
HOXA3O43365 AC092183.1-201ENST00000469884 875 ntBASIC14.08□□□□□ -0.16
HOXA3O43365 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXA3O43365 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXA3O43365 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXA3O43365 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXA3O43365 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXA3O43365 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXA3O43365 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXA3O43365 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXA3O43365 AL139424.1-201ENST00000607572 797 ntBASIC14.08□□□□□ -0.16
HOXA3O43365 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HOXA3O43365 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXA3O43365 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HOXA3O43365 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXA3O43365 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HOXA3O43365 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXA3O43365 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA3O43365 AL049757.1-201ENST00000616842 1596 ntBASIC14.08□□□□□ -0.16
HOXA3O43365 AC132938.5-201ENST00000624980 1813 ntBASIC14.08□□□□□ -0.16
HOXA3O43365 AC093677.2-201ENST00000600169 1863 ntBASIC14.08□□□□□ -0.16
HOXA3O43365 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 FUT8-AS1-201ENST00000621019 1521 ntBASIC14.07□□□□□ -0.16
HOXA3O43365 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
HOXA3O43365 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 YBX2P1-201ENST00000394192 760 ntBASIC14.07□□□□□ -0.16
HOXA3O43365 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 GPX1P2-201ENST00000429271 606 ntBASIC14.07□□□□□ -0.16
HOXA3O43365 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
HOXA3O43365 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.07□□□□□ -0.16
HOXA3O43365 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.07□□□□□ -0.16
HOXA3O43365 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms