Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC3O15379 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC3O15379 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC3O15379 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 AL603756.1-201ENST00000606511 2163 ntBASIC17.07■□□□□ 0.32
HDAC3O15379 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.07■□□□□ 0.32
HDAC3O15379 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.07■□□□□ 0.32
HDAC3O15379 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC3O15379 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.07■□□□□ 0.32
HDAC3O15379 TSPY12P-201ENST00000421279 868 ntBASIC17.07■□□□□ 0.32
HDAC3O15379 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HDAC3O15379 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC3O15379 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.07■□□□□ 0.32
HDAC3O15379 AC008550.1-201ENST00000511500 884 ntBASIC17.07■□□□□ 0.32
HDAC3O15379 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC3O15379 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC3O15379 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.07■□□□□ 0.32
HDAC3O15379 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HDAC3O15379 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HDAC3O15379 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC3O15379 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HDAC3O15379 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HDAC3O15379 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HDAC3O15379 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.06■□□□□ 0.32
HDAC3O15379 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
HDAC3O15379 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC3O15379 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HDAC3O15379 DOC2GP-204ENST00000639052 2548 ntBASIC17.06■□□□□ 0.32
HDAC3O15379 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC3O15379 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 KRT17P2-201ENST00000300992 1314 ntBASIC17.06■□□□□ 0.32
HDAC3O15379 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HDAC3O15379 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 SLC25A1P3-201ENST00000395415 828 ntBASIC17.06■□□□□ 0.32
HDAC3O15379 ECEL1P3-201ENST00000427961 737 ntBASIC17.06■□□□□ 0.32
HDAC3O15379 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC3O15379 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.06■□□□□ 0.32
HDAC3O15379 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.06■□□□□ 0.32
HDAC3O15379 NAPSB-206ENST00000562112 1266 ntBASIC17.06■□□□□ 0.32
HDAC3O15379 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC3O15379 AC004263.2-201ENST00000617183 678 ntBASIC17.06■□□□□ 0.32
HDAC3O15379 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC3O15379 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.06■□□□□ 0.32
HDAC3O15379 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.06■□□□□ 0.32
HDAC3O15379 AC093525.9-201ENST00000624961 1746 ntBASIC17.06■□□□□ 0.32
HDAC3O15379 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HDAC3O15379 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC3O15379 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
HDAC3O15379 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HDAC3O15379 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC3O15379 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.06■□□□□ 0.32
HDAC3O15379 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC3O15379 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC3O15379 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HDAC3O15379 PCDH8P1-201ENST00000428983 2773 ntBASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms