Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NKILA-202ENST00000614771 2598 ntBASIC18.81■□□□□ 0.6
SIX2Q9NPC8 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX2Q9NPC8 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 INTS4P1-201ENST00000438455 1935 ntBASIC18.8■□□□□ 0.6
SIX2Q9NPC8 AC092053.1-201ENST00000605787 1936 ntBASIC18.8■□□□□ 0.6
SIX2Q9NPC8 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 NSUN5P1-202ENST00000421140 1535 ntBASIC18.8■□□□□ 0.6
SIX2Q9NPC8 NSUN5P2-203ENST00000457352 1529 ntBASIC18.8■□□□□ 0.6
SIX2Q9NPC8 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX2Q9NPC8 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 LINC00265-3P-201ENST00000447588 903 ntBASIC18.79■□□□□ 0.6
SIX2Q9NPC8 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 AC111152.3-201ENST00000569699 673 ntBASIC18.79■□□□□ 0.6
SIX2Q9NPC8 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX2Q9NPC8 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 AC011676.5-201ENST00000624864 2660 ntBASIC18.78■□□□□ 0.6
SIX2Q9NPC8 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 RCN1P2-201ENST00000398357 915 ntBASIC18.78■□□□□ 0.6
SIX2Q9NPC8 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 Z69720.1-201ENST00000601483 472 ntBASIC18.78■□□□□ 0.6
SIX2Q9NPC8 AL445228.2-201ENST00000605589 952 ntBASIC18.78■□□□□ 0.6
SIX2Q9NPC8 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms