Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.55■□□□□ 0.08
MMP28Q9H239 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.55■□□□□ 0.08
MMP28Q9H239 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 AC133963.1-201ENST00000504166 1679 ntBASIC15.55■□□□□ 0.08
MMP28Q9H239 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC15.55■□□□□ 0.08
MMP28Q9H239 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
MMP28Q9H239 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
MMP28Q9H239 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.55■□□□□ 0.08
MMP28Q9H239 FAM210CP-201ENST00000445714 574 ntBASIC15.55■□□□□ 0.08
MMP28Q9H239 FAM207BP-201ENST00000447172 505 ntBASIC15.55■□□□□ 0.08
MMP28Q9H239 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC15.55■□□□□ 0.08
MMP28Q9H239 PRSS44-201ENST00000515154 1146 ntBASIC15.55■□□□□ 0.08
MMP28Q9H239 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
MMP28Q9H239 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.55■□□□□ 0.08
MMP28Q9H239 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MMP28Q9H239 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC15.55■□□□□ 0.08
MMP28Q9H239 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
MMP28Q9H239 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
MMP28Q9H239 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.54■□□□□ 0.08
MMP28Q9H239 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
MMP28Q9H239 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
MMP28Q9H239 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
MMP28Q9H239 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
MMP28Q9H239 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 MIR1224-201ENST00000408193 85 ntBASIC15.54■□□□□ 0.08
MMP28Q9H239 AC011506.1-201ENST00000474329 610 ntBASIC15.54■□□□□ 0.08
MMP28Q9H239 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 KRT18P21-201ENST00000515767 1272 ntBASIC15.54■□□□□ 0.08
MMP28Q9H239 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.54■□□□□ 0.08
MMP28Q9H239 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC15.54■□□□□ 0.08
MMP28Q9H239 AC026471.5-201ENST00000615068 467 ntBASIC15.54■□□□□ 0.08
MMP28Q9H239 AC130371.2-201ENST00000619443 611 ntBASIC15.54■□□□□ 0.08
MMP28Q9H239 PAUPAR-201ENST00000630360 2965 ntBASIC15.54■□□□□ 0.08
MMP28Q9H239 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.54■□□□□ 0.08
MMP28Q9H239 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
MMP28Q9H239 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.54■□□□□ 0.08
MMP28Q9H239 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC15.54■□□□□ 0.08
MMP28Q9H239 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
MMP28Q9H239 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.54■□□□□ 0.08
MMP28Q9H239 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.54■□□□□ 0.08
MMP28Q9H239 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MMP28Q9H239 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC15.53■□□□□ 0.08
MMP28Q9H239 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.53■□□□□ 0.08
MMP28Q9H239 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.53■□□□□ 0.08
MMP28Q9H239 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
MMP28Q9H239 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms