Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ZNF558Q96NG5 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 AC068137.2-201ENST00000605408 478 ntBASIC18.54■□□□□ 0.56
ZNF558Q96NG5 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 AC106028.4-201ENST00000614509 607 ntBASIC18.54■□□□□ 0.56
ZNF558Q96NG5 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ZNF558Q96NG5 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 TSEN15P1-201ENST00000423257 515 ntBASIC18.53■□□□□ 0.56
ZNF558Q96NG5 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
ZNF558Q96NG5 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 AC004835.2-201ENST00000603762 682 ntBASIC18.52■□□□□ 0.56
ZNF558Q96NG5 AC092902.6-201ENST00000641783 218 ntBASIC18.52■□□□□ 0.56
ZNF558Q96NG5 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF558Q96NG5 FLJ13224-201ENST00000313737 1514 ntBASIC18.52■□□□□ 0.56
ZNF558Q96NG5 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ZNF558Q96NG5 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
ZNF558Q96NG5 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
ZNF558Q96NG5 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF558Q96NG5 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.51■□□□□ 0.55
ZNF558Q96NG5 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.51■□□□□ 0.55
ZNF558Q96NG5 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF558Q96NG5 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF558Q96NG5 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.51■□□□□ 0.55
ZNF558Q96NG5 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.51■□□□□ 0.55
ZNF558Q96NG5 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms