Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 FAM201B-201ENST00000458407 597 ntBASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 MIR6786-201ENST00000616843 113 ntBASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.02□□□□□ -0.17
RPUSD4Q96CM3 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 AC133963.1-201ENST00000504166 1679 ntBASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 AC008040.2-201ENST00000461049 708 ntBASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 B3GAT3P1-201ENST00000471720 806 ntBASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 AC011506.1-201ENST00000474329 610 ntBASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RPUSD4Q96CM3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 FSCN1P1-201ENST00000568912 1481 ntBASIC14□□□□□ -0.17
RPUSD4Q96CM3 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 AL135905.2-201ENST00000584934 1404 ntBASIC14□□□□□ -0.17
RPUSD4Q96CM3 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC14□□□□□ -0.17
RPUSD4Q96CM3 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
RPUSD4Q96CM3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms