Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 AL133373.2-201ENST00000623187 2828 ntBASIC15.78■□□□□ 0.12
CPNE4Q96A23 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 AC002558.1-201ENST00000488906 803 ntBASIC15.78■□□□□ 0.12
CPNE4Q96A23 UNC93B7-201ENST00000509439 705 ntBASIC15.78■□□□□ 0.12
CPNE4Q96A23 IGHV3-52-201ENST00000519770 353 ntBASIC15.78■□□□□ 0.12
CPNE4Q96A23 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 AC006116.8-202ENST00000587620 1550 ntBASIC15.78■□□□□ 0.12
CPNE4Q96A23 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 MYCLP1-201ENST00000372451 1075 ntBASIC15.77■□□□□ 0.12
CPNE4Q96A23 AC005104.2-201ENST00000427818 678 ntBASIC15.77■□□□□ 0.12
CPNE4Q96A23 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 AC106795.1-205ENST00000512851 1056 ntBASIC15.77■□□□□ 0.12
CPNE4Q96A23 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 LINC01451-201ENST00000623792 534 ntBASIC15.77■□□□□ 0.12
CPNE4Q96A23 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.77■□□□□ 0.12
CPNE4Q96A23 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CPNE4Q96A23 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.77■□□□□ 0.11
CPNE4Q96A23 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.77■□□□□ 0.11
CPNE4Q96A23 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CPNE4Q96A23 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CPNE4Q96A23 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CPNE4Q96A23 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CPNE4Q96A23 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CPNE4Q96A23 AC008764.6-201ENST00000595909 2069 ntBASIC15.77■□□□□ 0.11
CPNE4Q96A23 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CPNE4Q96A23 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.11
CPNE4Q96A23 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CPNE4Q96A23 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CPNE4Q96A23 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.77■□□□□ 0.11
CPNE4Q96A23 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CPNE4Q96A23 AD001527.2-201ENST00000622994 785 ntBASIC15.76■□□□□ 0.11
CPNE4Q96A23 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.76■□□□□ 0.11
CPNE4Q96A23 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms