Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 AL136038.4-201ENST00000603606 1261 ntBASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 LINC01311-201ENST00000565162 1445 ntBASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 SDHAP2-201ENST00000455183 2001 ntBASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF111Q6ZNA4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 AL391807.1-203ENST00000604392 2365 ntBASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 AC092597.1-201ENST00000487352 616 ntBASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 AC087388.1-201ENST00000571370 1112 ntBASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 AC079602.3-201ENST00000623931 403 ntBASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF111Q6ZNA4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.05■□□□□ 0.32
RNF111Q6ZNA4 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms