Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 TNRC18P3-201ENST00000441896 2691 ntBASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC40Q4G0X9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC40Q4G0X9 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CCDC40Q4G0X9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC40Q4G0X9 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.33■□□□□ 0.69
CCDC40Q4G0X9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC40Q4G0X9 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 CROCCP1-201ENST00000426910 5675 ntBASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC40Q4G0X9 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 AC005104.2-201ENST00000427818 678 ntBASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 AL592071.1-201ENST00000611956 408 ntBASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 AC124864.1-201ENST00000623408 392 ntBASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC40Q4G0X9 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 AC080080.1-201ENST00000625121 2420 ntBASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 AL136038.3-201ENST00000561909 1096 ntBASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 AC011498.5-201ENST00000592027 486 ntBASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 IGHV3-41-201ENST00000613121 348 ntBASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 LYSMD4-203ENST00000378904 2122 ntBASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 AC010460.3-201ENST00000511359 1579 ntBASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC40Q4G0X9 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC40Q4G0X9 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC40Q4G0X9 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC40Q4G0X9 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC40Q4G0X9 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC40Q4G0X9 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms