Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
HSPG2P98160 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC10.73□□□□□ -0.69
HSPG2P98160 AC098614.1-201ENST00000368528 745 ntBASIC10.73□□□□□ -0.69
HSPG2P98160 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
HSPG2P98160 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
HSPG2P98160 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
HSPG2P98160 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC10.73□□□□□ -0.69
HSPG2P98160 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC10.73□□□□□ -0.69
HSPG2P98160 ME2-218ENST00000640965 2476 ntTSL 5 BASIC10.73□□□□□ -0.69
HSPG2P98160 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 AC009336.1-201ENST00000608941 1553 ntBASIC10.72□□□□□ -0.69
HSPG2P98160 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 AC092933.1-201ENST00000393644 945 ntBASIC10.72□□□□□ -0.69
HSPG2P98160 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC10.72□□□□□ -0.69
HSPG2P98160 RHOQP1-201ENST00000555758 579 ntBASIC10.72□□□□□ -0.69
HSPG2P98160 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
HSPG2P98160 AC093484.2-201ENST00000580996 2166 ntBASIC10.72□□□□□ -0.69
HSPG2P98160 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC10.72□□□□□ -0.69
HSPG2P98160 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC10.72□□□□□ -0.69
HSPG2P98160 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC10.72□□□□□ -0.69
HSPG2P98160 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 PHGDH-209ENST00000641074 1780 ntBASIC10.72□□□□□ -0.69
HSPG2P98160 AC093010.1-201ENST00000473625 1624 ntBASIC10.72□□□□□ -0.69
HSPG2P98160 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 INE1-201ENST00000456273 945 ntBASIC10.72□□□□□ -0.69
HSPG2P98160 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC10.72□□□□□ -0.69
HSPG2P98160 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC10.72□□□□□ -0.69
HSPG2P98160 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
HSPG2P98160 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC10.72□□□□□ -0.69
HSPG2P98160 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC10.72□□□□□ -0.69
HSPG2P98160 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC10.72□□□□□ -0.69
HSPG2P98160 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC10.72□□□□□ -0.69
HSPG2P98160 WASH4P-201ENST00000564273 1246 ntBASIC10.72□□□□□ -0.69
HSPG2P98160 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
HSPG2P98160 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC10.72□□□□□ -0.69
HSPG2P98160 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
HSPG2P98160 NKG7-205ENST00000600427 520 ntTSL 3 BASIC10.72□□□□□ -0.69
HSPG2P98160 CHCHD2P3-201ENST00000603038 451 ntBASIC10.72□□□□□ -0.69
HSPG2P98160 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
HSPG2P98160 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC10.71□□□□□ -0.69
HSPG2P98160 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC10.71□□□□□ -0.69
HSPG2P98160 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC10.71□□□□□ -0.69
HSPG2P98160 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC10.71□□□□□ -0.69
HSPG2P98160 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC10.71□□□□□ -0.69
HSPG2P98160 TEX28P1-201ENST00000613479 1221 ntBASIC10.71□□□□□ -0.69
HSPG2P98160 TEX28P2-201ENST00000617764 1221 ntBASIC10.71□□□□□ -0.69
HSPG2P98160 AL590560.3-201ENST00000623350 461 ntBASIC10.71□□□□□ -0.69
HSPG2P98160 SNX1-214ENST00000625244 324 ntTSL 5 BASIC10.71□□□□□ -0.69
HSPG2P98160 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC10.71□□□□□ -0.69
HSPG2P98160 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC10.71□□□□□ -0.69
HSPG2P98160 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC10.71□□□□□ -0.69
HSPG2P98160 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC10.71□□□□□ -0.69
HSPG2P98160 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
HSPG2P98160 NME6-203ENST00000415644 849 ntTSL 2 BASIC10.71□□□□□ -0.69
HSPG2P98160 RASL12-203ENST00000434605 982 ntTSL 2 BASIC10.71□□□□□ -0.69
HSPG2P98160 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC10.71□□□□□ -0.69
HSPG2P98160 RETN-203ENST00000629642 400 ntTSL 5 BASIC10.71□□□□□ -0.69
HSPG2P98160 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
HSPG2P98160 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
HSPG2P98160 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
HSPG2P98160 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC10.71□□□□□ -0.7
HSPG2P98160 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC10.71□□□□□ -0.7
HSPG2P98160 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC10.71□□□□□ -0.7
HSPG2P98160 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
HSPG2P98160 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.7
HSPG2P98160 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.7
HSPG2P98160 AC027369.6-201ENST00000525520 931 ntBASIC10.71□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms