Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 HTR5BP-201ENST00000430851 1154 ntBASIC18.81■□□□□ 0.6
VCPP55072 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.81■□□□□ 0.6
VCPP55072 DNAJB3-201ENST00000446806 729 ntBASIC18.81■□□□□ 0.6
VCPP55072 FGFR3P6-201ENST00000457012 610 ntBASIC18.81■□□□□ 0.6
VCPP55072 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPP55072 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.81■□□□□ 0.6
VCPP55072 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.81■□□□□ 0.6
VCPP55072 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPP55072 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPP55072 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPP55072 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VCPP55072 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
VCPP55072 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VCPP55072 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
VCPP55072 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPP55072 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
VCPP55072 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VCPP55072 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.81■□□□□ 0.6
VCPP55072 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPP55072 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
VCPP55072 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPP55072 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VCPP55072 KRT89P-201ENST00000620027 1478 ntBASIC18.8■□□□□ 0.6
VCPP55072 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPP55072 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPP55072 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPP55072 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VCPP55072 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.8■□□□□ 0.6
VCPP55072 KRT18P3-201ENST00000451602 1288 ntBASIC18.8■□□□□ 0.6
VCPP55072 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.8■□□□□ 0.6
VCPP55072 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.8■□□□□ 0.6
VCPP55072 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.8■□□□□ 0.6
VCPP55072 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
VCPP55072 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPP55072 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPP55072 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPP55072 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VCPP55072 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VCPP55072 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.79■□□□□ 0.6
VCPP55072 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.79■□□□□ 0.6
VCPP55072 AL591424.1-201ENST00000442569 1213 ntBASIC18.79■□□□□ 0.6
VCPP55072 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.79■□□□□ 0.6
VCPP55072 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.79■□□□□ 0.6
VCPP55072 AC114341.1-201ENST00000618070 349 ntBASIC18.79■□□□□ 0.6
VCPP55072 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.79■□□□□ 0.6
VCPP55072 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VCPP55072 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCPP55072 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.78■□□□□ 0.6
VCPP55072 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VCPP55072 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.78■□□□□ 0.6
VCPP55072 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 KRT18P28-201ENST00000453838 1332 ntBASIC18.78■□□□□ 0.6
VCPP55072 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.78■□□□□ 0.6
VCPP55072 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VCPP55072 BCL2-203ENST00000589955 5011 ntBASIC18.78■□□□□ 0.6
VCPP55072 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 AC006116.8-202ENST00000587620 1550 ntBASIC18.78■□□□□ 0.6
VCPP55072 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 AC012317.2-201ENST00000623305 2251 ntBASIC18.78■□□□□ 0.6
VCPP55072 RPS2P28-201ENST00000314255 741 ntBASIC18.78■□□□□ 0.6
VCPP55072 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.78■□□□□ 0.6
VCPP55072 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.78■□□□□ 0.6
VCPP55072 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.78■□□□□ 0.6
VCPP55072 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
VCPP55072 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.78■□□□□ 0.6
VCPP55072 CYMP-203ENST00000474680 1263 ntBASIC18.78■□□□□ 0.6
VCPP55072 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.78■□□□□ 0.6
VCPP55072 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.78■□□□□ 0.6
VCPP55072 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms