Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.91■■□□□ 1.1
RFC4P35249 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.91■■□□□ 1.1
RFC4P35249 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RFC4P35249 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RFC4P35249 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
RFC4P35249 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RFC4P35249 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RFC4P35249 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.91■■□□□ 1.1
RFC4P35249 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.91■■□□□ 1.1
RFC4P35249 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RFC4P35249 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RFC4P35249 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.9■■□□□ 1.1
RFC4P35249 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.9■■□□□ 1.1
RFC4P35249 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
RFC4P35249 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.9■■□□□ 1.1
RFC4P35249 CNN2P2-201ENST00000443536 909 ntBASIC21.9■■□□□ 1.1
RFC4P35249 CNN2P3-201ENST00000450201 906 ntBASIC21.9■■□□□ 1.1
RFC4P35249 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.9■■□□□ 1.1
RFC4P35249 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.9■■□□□ 1.1
RFC4P35249 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.9■■□□□ 1.1
RFC4P35249 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.9■■□□□ 1.1
RFC4P35249 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.9■■□□□ 1.1
RFC4P35249 AL136317.3-201ENST00000618497 906 ntBASIC21.9■■□□□ 1.1
RFC4P35249 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC4P35249 AC093677.2-201ENST00000600169 1863 ntBASIC21.9■■□□□ 1.1
RFC4P35249 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.89■■□□□ 1.1
RFC4P35249 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
RFC4P35249 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
RFC4P35249 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.89■■□□□ 1.1
RFC4P35249 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
RFC4P35249 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.89■■□□□ 1.1
RFC4P35249 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
RFC4P35249 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC4P35249 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC21.89■■□□□ 1.09
RFC4P35249 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC4P35249 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC4P35249 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC4P35249 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC4P35249 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC4P35249 AC005034.1-201ENST00000426657 489 ntBASIC21.89■■□□□ 1.09
RFC4P35249 AL592309.1-201ENST00000443127 649 ntBASIC21.89■■□□□ 1.09
RFC4P35249 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC21.89■■□□□ 1.09
RFC4P35249 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.89■■□□□ 1.09
RFC4P35249 AC099522.2-201ENST00000607001 744 ntBASIC21.89■■□□□ 1.09
RFC4P35249 AL035252.4-201ENST00000624174 288 ntBASIC21.89■■□□□ 1.09
RFC4P35249 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC4P35249 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.89■■□□□ 1.09
RFC4P35249 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC4P35249 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.89■■□□□ 1.09
RFC4P35249 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.88■■□□□ 1.09
RFC4P35249 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.88■■□□□ 1.09
RFC4P35249 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFC4P35249 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.88■■□□□ 1.09
RFC4P35249 AC129492.6-201ENST00000611383 1305 ntBASIC21.88■■□□□ 1.09
RFC4P35249 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.88■■□□□ 1.09
RFC4P35249 BASP1P1-201ENST00000430708 665 ntBASIC21.88■■□□□ 1.09
RFC4P35249 AC055876.3-201ENST00000431496 288 ntBASIC21.88■■□□□ 1.09
RFC4P35249 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFC4P35249 AC069335.1-201ENST00000489972 472 ntBASIC21.88■■□□□ 1.09
RFC4P35249 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC21.88■■□□□ 1.09
RFC4P35249 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.88■■□□□ 1.09
RFC4P35249 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.88■■□□□ 1.09
RFC4P35249 AC138649.4-201ENST00000612222 287 ntBASIC21.88■■□□□ 1.09
RFC4P35249 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21.88■■□□□ 1.09
RFC4P35249 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFC4P35249 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.88■■□□□ 1.09
RFC4P35249 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.88■■□□□ 1.09
RFC4P35249 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
RFC4P35249 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFC4P35249 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFC4P35249 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.88■■□□□ 1.09
RFC4P35249 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.88■■□□□ 1.09
RFC4P35249 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.88■■□□□ 1.09
RFC4P35249 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.88■■□□□ 1.09
RFC4P35249 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFC4P35249 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFC4P35249 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.87■■□□□ 1.09
RFC4P35249 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.87■■□□□ 1.09
RFC4P35249 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC21.87■■□□□ 1.09
RFC4P35249 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
RFC4P35249 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC21.87■■□□□ 1.09
RFC4P35249 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms