Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.74■□□□□ 0.75
CIITAP33076 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.74■□□□□ 0.75
CIITAP33076 OR7E14P-202ENST00000530490 1290 ntBASIC19.74■□□□□ 0.75
CIITAP33076 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.74■□□□□ 0.75
CIITAP33076 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.74■□□□□ 0.75
CIITAP33076 AP001005.1-201ENST00000571755 1248 ntBASIC19.74■□□□□ 0.75
CIITAP33076 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CIITAP33076 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CIITAP33076 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.74■□□□□ 0.75
CIITAP33076 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.74■□□□□ 0.75
CIITAP33076 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CIITAP33076 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CIITAP33076 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CIITAP33076 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CIITAP33076 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
CIITAP33076 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.73■□□□□ 0.75
CIITAP33076 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CIITAP33076 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CIITAP33076 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CIITAP33076 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.73■□□□□ 0.75
CIITAP33076 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CIITAP33076 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CIITAP33076 AL135999.2-201ENST00000622438 1686 ntBASIC19.73■□□□□ 0.75
CIITAP33076 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.73■□□□□ 0.75
CIITAP33076 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.73■□□□□ 0.75
CIITAP33076 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.73■□□□□ 0.75
CIITAP33076 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.73■□□□□ 0.75
CIITAP33076 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CIITAP33076 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.73■□□□□ 0.75
CIITAP33076 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CIITAP33076 AL049840.3-201ENST00000602669 611 ntBASIC19.73■□□□□ 0.75
CIITAP33076 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.73■□□□□ 0.75
CIITAP33076 MIR7706-201ENST00000613747 67 ntBASIC19.73■□□□□ 0.75
CIITAP33076 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.73■□□□□ 0.75
CIITAP33076 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CIITAP33076 AL138688.1-201ENST00000624851 1594 ntBASIC19.73■□□□□ 0.75
CIITAP33076 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CIITAP33076 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.73■□□□□ 0.75
CIITAP33076 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.73■□□□□ 0.75
CIITAP33076 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CIITAP33076 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.73■□□□□ 0.75
CIITAP33076 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CIITAP33076 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 RPS2P28-201ENST00000314255 741 ntBASIC19.72■□□□□ 0.75
CIITAP33076 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CIITAP33076 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.72■□□□□ 0.75
CIITAP33076 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.72■□□□□ 0.75
CIITAP33076 KRT18P27-201ENST00000427733 1299 ntBASIC19.72■□□□□ 0.75
CIITAP33076 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.72■□□□□ 0.75
CIITAP33076 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.72■□□□□ 0.75
CIITAP33076 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 AC139887.3-201ENST00000568585 713 ntBASIC19.72■□□□□ 0.75
CIITAP33076 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.72■□□□□ 0.75
CIITAP33076 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.72■□□□□ 0.75
CIITAP33076 AC008735.5-201ENST00000623544 497 ntBASIC19.72■□□□□ 0.75
CIITAP33076 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
CIITAP33076 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CIITAP33076 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CIITAP33076 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.72■□□□□ 0.75
CIITAP33076 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CIITAP33076 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.72■□□□□ 0.75
CIITAP33076 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CIITAP33076 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CIITAP33076 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.71■□□□□ 0.75
CIITAP33076 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.71■□□□□ 0.75
CIITAP33076 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.71■□□□□ 0.75
CIITAP33076 ACTG1P4-201ENST00000425123 1122 ntBASIC19.71■□□□□ 0.75
CIITAP33076 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.71■□□□□ 0.75
CIITAP33076 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.71■□□□□ 0.75
CIITAP33076 AC012640.2-201ENST00000561606 901 ntBASIC19.71■□□□□ 0.75
CIITAP33076 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
CIITAP33076 AC004706.3-202ENST00000621574 984 ntBASIC19.71■□□□□ 0.75
CIITAP33076 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CIITAP33076 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CIITAP33076 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.74
CIITAP33076 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms