Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A1P12109 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A1P12109 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
COL6A1P12109 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
COL6A1P12109 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A1P12109 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A1P12109 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.24■□□□□ 0.67
COL6A1P12109 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.24■□□□□ 0.67
COL6A1P12109 WRB-204ENST00000398753 699 ntTSL 3 BASIC19.24■□□□□ 0.67
COL6A1P12109 AC107890.1-201ENST00000422478 521 ntBASIC19.24■□□□□ 0.67
COL6A1P12109 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.24■□□□□ 0.67
COL6A1P12109 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC19.24■□□□□ 0.67
COL6A1P12109 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.24■□□□□ 0.67
COL6A1P12109 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.24■□□□□ 0.67
COL6A1P12109 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL6A1P12109 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A1P12109 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
COL6A1P12109 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.23■□□□□ 0.67
COL6A1P12109 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL6A1P12109 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.23■□□□□ 0.67
COL6A1P12109 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A1P12109 ACTG1P4-201ENST00000425123 1122 ntBASIC19.23■□□□□ 0.67
COL6A1P12109 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
COL6A1P12109 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.23■□□□□ 0.67
COL6A1P12109 AC140658.5-201ENST00000438532 169 ntBASIC19.23■□□□□ 0.67
COL6A1P12109 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
COL6A1P12109 IGHV3-52-201ENST00000519770 353 ntBASIC19.23■□□□□ 0.67
COL6A1P12109 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.23■□□□□ 0.67
COL6A1P12109 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.23■□□□□ 0.67
COL6A1P12109 AC243562.1-201ENST00000560672 389 ntBASIC19.23■□□□□ 0.67
COL6A1P12109 COX11-202ENST00000571584 1108 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A1P12109 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.23■□□□□ 0.67
COL6A1P12109 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL6A1P12109 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A1P12109 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A1P12109 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A1P12109 CROCCP3-202ENST00000420820 1947 ntBASIC19.23■□□□□ 0.67
COL6A1P12109 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.23■□□□□ 0.67
COL6A1P12109 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A1P12109 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A1P12109 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A1P12109 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A1P12109 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A1P12109 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 FO538757.1-201ENST00000623083 1397 ntBASIC19.22■□□□□ 0.67
COL6A1P12109 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A1P12109 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A1P12109 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 KRT18P32-201ENST00000424695 1287 ntBASIC19.22■□□□□ 0.67
COL6A1P12109 HLA-V-201ENST00000429037 534 ntBASIC19.22■□□□□ 0.67
COL6A1P12109 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.22■□□□□ 0.67
COL6A1P12109 CR383656.12-201ENST00000549567 513 ntBASIC19.22■□□□□ 0.67
COL6A1P12109 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC19.22■□□□□ 0.67
COL6A1P12109 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.22■□□□□ 0.67
COL6A1P12109 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC19.22■□□□□ 0.67
COL6A1P12109 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A1P12109 AC140878.1-201ENST00000565277 250 ntBASIC19.22■□□□□ 0.67
COL6A1P12109 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.22■□□□□ 0.67
COL6A1P12109 AL008721.1-201ENST00000609964 604 ntBASIC19.22■□□□□ 0.67
COL6A1P12109 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.22■□□□□ 0.67
COL6A1P12109 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
COL6A1P12109 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.22■□□□□ 0.67
COL6A1P12109 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL6A1P12109 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A1P12109 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A1P12109 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
COL6A1P12109 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms