Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CXCL1P09341 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.65□□□□□ -0.22
CXCL1P09341 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.65□□□□□ -0.22
CXCL1P09341 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC13.65□□□□□ -0.22
CXCL1P09341 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC13.65□□□□□ -0.22
CXCL1P09341 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.65□□□□□ -0.22
CXCL1P09341 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
CXCL1P09341 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC13.64□□□□□ -0.23
CXCL1P09341 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC13.64□□□□□ -0.23
CXCL1P09341 F11R-206ENST00000621309 4770 ntTSL 5 BASIC13.64□□□□□ -0.23
CXCL1P09341 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 AP000593.1-201ENST00000393668 712 ntBASIC13.64□□□□□ -0.23
CXCL1P09341 GUSBP6-202ENST00000438529 1198 ntBASIC13.64□□□□□ -0.23
CXCL1P09341 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC13.64□□□□□ -0.23
CXCL1P09341 AC006970.2-201ENST00000450065 779 ntBASIC13.64□□□□□ -0.23
CXCL1P09341 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC13.64□□□□□ -0.23
CXCL1P09341 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC13.64□□□□□ -0.23
CXCL1P09341 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC13.64□□□□□ -0.23
CXCL1P09341 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
CXCL1P09341 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CXCL1P09341 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.64□□□□□ -0.23
CXCL1P09341 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.64□□□□□ -0.23
CXCL1P09341 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.64□□□□□ -0.23
CXCL1P09341 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CXCL1P09341 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13.64□□□□□ -0.23
CXCL1P09341 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CXCL1P09341 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CXCL1P09341 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
CXCL1P09341 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 TSPY6P-201ENST00000448518 926 ntBASIC13.63□□□□□ -0.23
CXCL1P09341 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 F2R-202ENST00000505600 442 ntTSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 UNC93B4-201ENST00000505679 747 ntBASIC13.63□□□□□ -0.23
CXCL1P09341 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 CFL2-205ENST00000555765 632 ntTSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC13.63□□□□□ -0.23
CXCL1P09341 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 AC092437.1-201ENST00000624794 1048 ntBASIC13.63□□□□□ -0.23
CXCL1P09341 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC13.63□□□□□ -0.23
CXCL1P09341 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CXCL1P09341 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.63□□□□□ -0.23
CXCL1P09341 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 AC116353.5-201ENST00000638148 1699 ntBASIC13.63□□□□□ -0.23
CXCL1P09341 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CXCL1P09341 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms