Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.11■□□□□ 0.33
TNFP01375 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.11■□□□□ 0.33
TNFP01375 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.11■□□□□ 0.33
TNFP01375 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.11■□□□□ 0.33
TNFP01375 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
TNFP01375 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
TNFP01375 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TNFP01375 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TNFP01375 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TNFP01375 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.11■□□□□ 0.33
TNFP01375 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TNFP01375 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.1■□□□□ 0.33
TNFP01375 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 LINC00982-205ENST00000420957 435 ntBASIC17.1■□□□□ 0.33
TNFP01375 BX842568.4-201ENST00000421222 227 ntBASIC17.1■□□□□ 0.33
TNFP01375 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.1■□□□□ 0.33
TNFP01375 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.1■□□□□ 0.33
TNFP01375 AC007967.2-201ENST00000432613 625 ntBASIC17.1■□□□□ 0.33
TNFP01375 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.1■□□□□ 0.33
TNFP01375 PGAM5P1-201ENST00000518923 814 ntBASIC17.1■□□□□ 0.33
TNFP01375 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.1■□□□□ 0.33
TNFP01375 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.1■□□□□ 0.33
TNFP01375 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.1■□□□□ 0.33
TNFP01375 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.1■□□□□ 0.33
TNFP01375 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.1■□□□□ 0.33
TNFP01375 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TNFP01375 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.1■□□□□ 0.33
TNFP01375 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.1■□□□□ 0.33
TNFP01375 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.1■□□□□ 0.33
TNFP01375 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.1■□□□□ 0.33
TNFP01375 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TNFP01375 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TNFP01375 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TNFP01375 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
TNFP01375 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.09■□□□□ 0.33
TNFP01375 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TNFP01375 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
TNFP01375 RPS15P9-201ENST00000494093 319 ntBASIC17.09■□□□□ 0.33
TNFP01375 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.09■□□□□ 0.33
TNFP01375 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.09■□□□□ 0.33
TNFP01375 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 LINC01451-201ENST00000623792 534 ntBASIC17.09■□□□□ 0.33
TNFP01375 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TNFP01375 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.09■□□□□ 0.33
TNFP01375 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.09■□□□□ 0.33
TNFP01375 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TNFP01375 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.09■□□□□ 0.33
TNFP01375 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.09■□□□□ 0.33
TNFP01375 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TNFP01375 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.09■□□□□ 0.33
TNFP01375 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
TNFP01375 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TNFP01375 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TNFP01375 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TNFP01375 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TNFP01375 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TNFP01375 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TNFP01375 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.08■□□□□ 0.33
TNFP01375 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TNFP01375 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
TNFP01375 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TNFP01375 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
TNFP01375 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms