Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB3O75112 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB3O75112 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LDB3O75112 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.52■□□□□ 0.24
LDB3O75112 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.52■□□□□ 0.24
LDB3O75112 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.52■□□□□ 0.24
LDB3O75112 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.52■□□□□ 0.24
LDB3O75112 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LDB3O75112 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB3O75112 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDB3O75112 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LDB3O75112 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDB3O75112 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LDB3O75112 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDB3O75112 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDB3O75112 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDB3O75112 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.51■□□□□ 0.23
LDB3O75112 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.51■□□□□ 0.23
LDB3O75112 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.51■□□□□ 0.23
LDB3O75112 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.51■□□□□ 0.23
LDB3O75112 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LDB3O75112 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.51■□□□□ 0.23
LDB3O75112 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.51■□□□□ 0.23
LDB3O75112 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.51■□□□□ 0.23
LDB3O75112 AC002558.1-201ENST00000488906 803 ntBASIC16.51■□□□□ 0.23
LDB3O75112 IGHV3-52-201ENST00000519770 353 ntBASIC16.51■□□□□ 0.23
LDB3O75112 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.51■□□□□ 0.23
LDB3O75112 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LDB3O75112 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.51■□□□□ 0.23
LDB3O75112 IFNL4P1-201ENST00000607083 540 ntBASIC16.51■□□□□ 0.23
LDB3O75112 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LDB3O75112 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LDB3O75112 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
LDB3O75112 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.51■□□□□ 0.23
LDB3O75112 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LDB3O75112 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.51■□□□□ 0.23
LDB3O75112 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
LDB3O75112 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.51■□□□□ 0.23
LDB3O75112 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB3O75112 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB3O75112 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
LDB3O75112 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB3O75112 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.5■□□□□ 0.23
LDB3O75112 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.5■□□□□ 0.23
LDB3O75112 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB3O75112 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.5■□□□□ 0.23
LDB3O75112 UNC93B7-201ENST00000509439 705 ntBASIC16.5■□□□□ 0.23
LDB3O75112 AC111152.3-201ENST00000569699 673 ntBASIC16.5■□□□□ 0.23
LDB3O75112 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
LDB3O75112 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.5■□□□□ 0.23
LDB3O75112 AD001527.2-201ENST00000622994 785 ntBASIC16.5■□□□□ 0.23
LDB3O75112 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
LDB3O75112 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
LDB3O75112 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.5■□□□□ 0.23
LDB3O75112 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB3O75112 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms