Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 WIZP1-201ENST00000531444 2299 ntBASIC14.11□□□□□ -0.15
HOXA3O43365 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.11□□□□□ -0.15
HOXA3O43365 AC005104.2-201ENST00000427818 678 ntBASIC14.11□□□□□ -0.15
HOXA3O43365 CRCP-205ENST00000431089 942 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 AC009947.1-201ENST00000444350 727 ntBASIC14.11□□□□□ -0.15
HOXA3O43365 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
HOXA3O43365 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 AC040169.1-201ENST00000565382 521 ntBASIC14.11□□□□□ -0.15
HOXA3O43365 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXA3O43365 AL691403.2-201ENST00000618460 490 ntBASIC14.11□□□□□ -0.15
HOXA3O43365 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
HOXA3O43365 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
HOXA3O43365 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA3O43365 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
HOXA3O43365 AC007613.1-201ENST00000572811 2597 ntBASIC14.11□□□□□ -0.15
HOXA3O43365 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
HOXA3O43365 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA3O43365 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA3O43365 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXA3O43365 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA3O43365 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
HOXA3O43365 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA3O43365 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXA3O43365 KRT18P27-201ENST00000427733 1299 ntBASIC14.1□□□□□ -0.15
HOXA3O43365 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXA3O43365 AC136632.2-201ENST00000512891 861 ntBASIC14.1□□□□□ -0.15
HOXA3O43365 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXA3O43365 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
HOXA3O43365 MIR3687-2-201ENST00000577708 61 ntBASIC14.1□□□□□ -0.15
HOXA3O43365 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA3O43365 AC116407.2-201ENST00000613639 860 ntBASIC14.1□□□□□ -0.15
HOXA3O43365 MIR3687-1-201ENST00000614492 61 ntBASIC14.1□□□□□ -0.15
HOXA3O43365 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA3O43365 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
HOXA3O43365 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA3O43365 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HOXA3O43365 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA3O43365 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA3O43365 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
HOXA3O43365 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA3O43365 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC14.1□□□□□ -0.15
HOXA3O43365 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA3O43365 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA3O43365 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA3O43365 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
HOXA3O43365 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA3O43365 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA3O43365 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms