Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.82■□□□□ 0.44
HOXC11O43248 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.82■□□□□ 0.44
HOXC11O43248 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.82■□□□□ 0.44
HOXC11O43248 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
HOXC11O43248 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.82■□□□□ 0.44
HOXC11O43248 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HOXC11O43248 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.81■□□□□ 0.44
HOXC11O43248 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.81■□□□□ 0.44
HOXC11O43248 AC002310.6-201ENST00000624451 1377 ntBASIC17.81■□□□□ 0.44
HOXC11O43248 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 AC104581.1-202ENST00000635932 2618 ntBASIC17.81■□□□□ 0.44
HOXC11O43248 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
HOXC11O43248 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 ABALON-201ENST00000629058 1903 ntBASIC17.81■□□□□ 0.44
HOXC11O43248 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.81■□□□□ 0.44
HOXC11O43248 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 MRPL20P1-201ENST00000400819 433 ntBASIC17.81■□□□□ 0.44
HOXC11O43248 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.81■□□□□ 0.44
HOXC11O43248 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.81■□□□□ 0.44
HOXC11O43248 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.81■□□□□ 0.44
HOXC11O43248 AC092183.1-201ENST00000469884 875 ntBASIC17.81■□□□□ 0.44
HOXC11O43248 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 GGTLC5P-201ENST00000617623 998 ntBASIC17.81■□□□□ 0.44
HOXC11O43248 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
HOXC11O43248 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.81■□□□□ 0.44
HOXC11O43248 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.81■□□□□ 0.44
HOXC11O43248 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.81■□□□□ 0.44
HOXC11O43248 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HOXC11O43248 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC11O43248 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HOXC11O43248 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.81■□□□□ 0.44
HOXC11O43248 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.81■□□□□ 0.44
HOXC11O43248 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 REXO1L11P-201ENST00000620964 1927 ntBASIC17.8■□□□□ 0.44
HOXC11O43248 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC11O43248 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.8■□□□□ 0.44
HOXC11O43248 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.8■□□□□ 0.44
HOXC11O43248 MCCD1P2-201ENST00000423228 335 ntBASIC17.8■□□□□ 0.44
HOXC11O43248 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC11O43248 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.8■□□□□ 0.44
HOXC11O43248 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
HOXC11O43248 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC11O43248 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.8■□□□□ 0.44
HOXC11O43248 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HOXC11O43248 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC11O43248 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC11O43248 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.8■□□□□ 0.44
HOXC11O43248 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC11O43248 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC11O43248 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC11O43248 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC11O43248 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.8■□□□□ 0.44
HOXC11O43248 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.79■□□□□ 0.44
HOXC11O43248 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HOXC11O43248 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 BICD1-207ENST00000551848 1962 ntBASIC17.79■□□□□ 0.44
HOXC11O43248 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.79■□□□□ 0.44
HOXC11O43248 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.79■□□□□ 0.44
HOXC11O43248 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HOXC11O43248 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.79■□□□□ 0.44
HOXC11O43248 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms