Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
CUX2O14529 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
CUX2O14529 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC29.7■■■□□ 2.35
CUX2O14529 ALG1L8P-201ENST00000533887 760 ntBASIC29.7■■■□□ 2.35
CUX2O14529 WASH4P-201ENST00000564273 1246 ntBASIC29.7■■■□□ 2.35
CUX2O14529 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
CUX2O14529 SPDYE12P-201ENST00000618416 771 ntBASIC29.7■■■□□ 2.35
CUX2O14529 ADM-207ENST00000530439 1839 ntTSL 2 BASIC29.7■■■□□ 2.34
CUX2O14529 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.34
CUX2O14529 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
CUX2O14529 SIRPAP1-201ENST00000448467 1770 ntBASIC29.7■■■□□ 2.34
CUX2O14529 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.34
CUX2O14529 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC29.7■■■□□ 2.34
CUX2O14529 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.34
CUX2O14529 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC29.69■■■□□ 2.34
CUX2O14529 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC29.69■■■□□ 2.34
CUX2O14529 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
CUX2O14529 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC29.69■■■□□ 2.34
CUX2O14529 AC099568.2-201ENST00000609194 695 ntBASIC29.69■■■□□ 2.34
CUX2O14529 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
CUX2O14529 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC29.69■■■□□ 2.34
CUX2O14529 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
CUX2O14529 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
CUX2O14529 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
CUX2O14529 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC29.68■■■□□ 2.34
CUX2O14529 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC29.68■■■□□ 2.34
CUX2O14529 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC29.68■■■□□ 2.34
CUX2O14529 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC29.68■■■□□ 2.34
CUX2O14529 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC29.68■■■□□ 2.34
CUX2O14529 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC29.68■■■□□ 2.34
CUX2O14529 AC005332.7-201ENST00000614046 2005 ntBASIC29.68■■■□□ 2.34
CUX2O14529 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC29.68■■■□□ 2.34
CUX2O14529 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC29.68■■■□□ 2.34
CUX2O14529 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC29.68■■■□□ 2.34
CUX2O14529 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC29.68■■■□□ 2.34
CUX2O14529 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
CUX2O14529 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 RN7SL752P-201ENST00000463779 287 ntBASIC29.68■■■□□ 2.34
CUX2O14529 AC027369.6-201ENST00000525520 931 ntBASIC29.68■■■□□ 2.34
CUX2O14529 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC29.68■■■□□ 2.34
CUX2O14529 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC29.68■■■□□ 2.34
CUX2O14529 AL512343.1-201ENST00000605837 169 ntBASIC29.68■■■□□ 2.34
CUX2O14529 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CUX2O14529 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX2O14529 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC29.67■■■□□ 2.34
CUX2O14529 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
CUX2O14529 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX2O14529 ANO7L1-203ENST00000602586 1720 ntBASIC29.67■■■□□ 2.34
CUX2O14529 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
CUX2O14529 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX2O14529 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC29.67■■■□□ 2.34
CUX2O14529 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC29.67■■■□□ 2.34
CUX2O14529 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
CUX2O14529 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC29.67■■■□□ 2.34
CUX2O14529 COX5BP2-201ENST00000392354 334 ntBASIC29.67■■■□□ 2.34
CUX2O14529 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC29.67■■■□□ 2.34
CUX2O14529 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC29.67■■■□□ 2.34
CUX2O14529 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX2O14529 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX2O14529 PTGES2-AS1-201ENST00000443493 2100 ntBASIC29.66■■■□□ 2.34
CUX2O14529 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC29.66■■■□□ 2.34
CUX2O14529 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
CUX2O14529 UXT-AS1-201ENST00000590504 1525 ntBASIC29.66■■■□□ 2.34
CUX2O14529 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX2O14529 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX2O14529 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC29.66■■■□□ 2.34
CUX2O14529 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
CUX2O14529 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX2O14529 AC020907.1-201ENST00000616460 1350 ntBASIC29.66■■■□□ 2.34
CUX2O14529 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CUX2O14529 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CUX2O14529 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CUX2O14529 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CUX2O14529 ACTBP11-201ENST00000436287 1126 ntBASIC29.65■■■□□ 2.34
CUX2O14529 IGHV3-62-201ENST00000520057 340 ntBASIC29.65■■■□□ 2.34
CUX2O14529 USB1-203ENST00000539737 1212 ntTSL 2 BASIC29.65■■■□□ 2.34
CUX2O14529 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
CUX2O14529 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC29.65■■■□□ 2.34
CUX2O14529 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CUX2O14529 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX2O14529 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX2O14529 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX2O14529 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
CUX2O14529 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
CUX2O14529 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC29.64■■■□□ 2.34
CUX2O14529 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX2O14529 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX2O14529 SNX29P1-201ENST00000548357 1007 ntBASIC29.64■■■□□ 2.34
CUX2O14529 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC29.64■■■□□ 2.34
CUX2O14529 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC29.64■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms