Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 STK19B-204ENST00000512515 211 ntBASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 RNA5SP416-201ENST00000516838 111 ntBASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 AC136632.2-201ENST00000512891 861 ntBASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 AC139530.3-201ENST00000620344 690 ntBASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 AL138781.2-201ENST00000617896 1843 ntBASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 AC090164.3-201ENST00000610780 2143 ntBASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDP1Q9Y5B0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 AC132938.5-201ENST00000624980 1813 ntBASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 AL020996.1-203ENST00000536896 2307 ntBASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTDP1Q9Y5B0 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.27■□□□□ 0.84
CTDP1Q9Y5B0 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms