Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 MED15P5-201ENST00000423150 992 ntBASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 MEG3-211ENST00000452514 461 ntTSL 3 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 AL138831.2-201ENST00000606564 490 ntBASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
PDZRN3Q9UPQ7 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 NME9-203ENST00000383180 2133 ntTSL 2 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 CSF3-203ENST00000394148 622 ntTSL 3 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 ABCD1P5-201ENST00000445663 754 ntBASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 RBSN-204ENST00000449050 903 ntTSL 2 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 AC140113.2-201ENST00000604370 208 ntBASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 AC009154.2-201ENST00000621177 724 ntBASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 AC079781.4-201ENST00000641908 219 ntBASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDZRN3Q9UPQ7 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC22.64■■□□□ 1.22
PDZRN3Q9UPQ7 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
PDZRN3Q9UPQ7 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC22.64■■□□□ 1.22
PDZRN3Q9UPQ7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
PDZRN3Q9UPQ7 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
PDZRN3Q9UPQ7 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PDZRN3Q9UPQ7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
PDZRN3Q9UPQ7 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PDZRN3Q9UPQ7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
PDZRN3Q9UPQ7 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 AC098831.1-202ENST00000438821 336 ntBASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 DNAJB3-201ENST00000446806 729 ntBASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 AC034105.1-201ENST00000563488 319 ntBASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 AL356488.2-201ENST00000602755 427 ntBASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDZRN3Q9UPQ7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 AC055717.3-201ENST00000622967 595 ntBASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC22.63■■□□□ 1.21
PDZRN3Q9UPQ7 KRT18P55-202ENST00000578578 1546 ntBASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 RPSAP43-201ENST00000402237 625 ntBASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 NMU-202ENST00000505262 693 ntTSL 3 BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 AC040169.1-201ENST00000565382 521 ntBASIC22.62■■□□□ 1.21
PDZRN3Q9UPQ7 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms