Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 SEC1P-202ENST00000473944 940 ntBASIC17.06■□□□□ 0.32
VPS4AQ9UN37 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 AC024243.1-201ENST00000609234 778 ntBASIC17.06■□□□□ 0.32
VPS4AQ9UN37 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4AQ9UN37 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 PP12613-201ENST00000424958 2230 ntBASIC17.05■□□□□ 0.32
VPS4AQ9UN37 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 AC079781.3-201ENST00000449110 356 ntBASIC17.05■□□□□ 0.32
VPS4AQ9UN37 FOSL1P1-201ENST00000511041 816 ntBASIC17.05■□□□□ 0.32
VPS4AQ9UN37 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.05■□□□□ 0.32
VPS4AQ9UN37 AC099398.1-201ENST00000567919 2776 ntBASIC17.05■□□□□ 0.32
VPS4AQ9UN37 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS4AQ9UN37 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 TSPY22P-201ENST00000427496 604 ntBASIC17.04■□□□□ 0.32
VPS4AQ9UN37 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 AC011270.2-201ENST00000624293 2550 ntBASIC17.04■□□□□ 0.32
VPS4AQ9UN37 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS4AQ9UN37 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 PCDHA12-202ENST00000613593 2588 ntBASIC17.03■□□□□ 0.32
VPS4AQ9UN37 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 AC022898.2-201ENST00000616822 1312 ntBASIC17.03■□□□□ 0.32
VPS4AQ9UN37 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms