Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 LINC01568-207ENST00000641790 1380 ntBASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 ECEL1P2-202ENST00000465689 757 ntBASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 AC116407.2-201ENST00000613639 860 ntBASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.53■□□□□ 0.56
SMARCAL1Q9NZC9 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 PKD1P1-201ENST00000458669 6805 ntBASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 DOC2GP-204ENST00000639052 2548 ntBASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 DDX43P3-201ENST00000441064 443 ntBASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 AC010653.2-201ENST00000623505 997 ntBASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 AC073912.3-201ENST00000624414 853 ntBASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 AC092053.1-201ENST00000605787 1936 ntBASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCAL1Q9NZC9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.52■□□□□ 0.55
SMARCAL1Q9NZC9 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCAL1Q9NZC9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.55
SMARCAL1Q9NZC9 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCAL1Q9NZC9 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCAL1Q9NZC9 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCAL1Q9NZC9 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.52■□□□□ 0.55
SMARCAL1Q9NZC9 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 PVRIG2P-201ENST00000435460 978 ntBASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms