Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
TRIM39Q9HCM9 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
TRIM39Q9HCM9 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 AC106795.1-205ENST00000512851 1056 ntBASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 AP005117.1-201ENST00000584346 1413 ntBASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM39Q9HCM9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 RBM17P3-201ENST00000417687 1192 ntBASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 AF238378.1-201ENST00000526806 358 ntBASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 AD001527.2-201ENST00000622994 785 ntBASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 AP000867.4-201ENST00000641616 219 ntBASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM39Q9HCM9 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 SIRPAP1-201ENST00000448467 1770 ntBASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms