Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 PCDHA14-201ENST00000506751 2298 ntBASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 UNC93B2-201ENST00000285383 730 ntBASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 CD99P1-205ENST00000527459 561 ntBASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC28BQ9BUN5 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 RBM17P1-201ENST00000453646 1190 ntBASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 AP003071.4-201ENST00000562276 1284 ntBASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC28BQ9BUN5 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 FITM1-202ENST00000559294 800 ntBASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28BQ9BUN5 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms