Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AC133963.1-201ENST00000504166 1679 ntBASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AKR1C7P-201ENST00000305623 895 ntBASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AC004870.1-201ENST00000315132 882 ntBASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AC100803.2-201ENST00000562459 1963 ntBASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AC005332.8-201ENST00000622750 2735 ntBASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 AC112698.1-201ENST00000510299 916 ntBASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4CQ96CF2 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
CHMP4CQ96CF2 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 AL591684.3-201ENST00000605187 298 ntBASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 AL353801.3-201ENST00000609898 542 ntBASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4CQ96CF2 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 TP73-AS1-210ENST00000637775 1455 ntBASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 MIR5100-201ENST00000579544 119 ntBASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms