Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SKA1Q96BD8 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SKA1Q96BD8 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SKA1Q96BD8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SKA1Q96BD8 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SKA1Q96BD8 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SKA1Q96BD8 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.07■□□□□ 0.48
SKA1Q96BD8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 MIR149-201ENST00000384879 89 ntBASIC18.06■□□□□ 0.48
SKA1Q96BD8 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.06■□□□□ 0.48
SKA1Q96BD8 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SKA1Q96BD8 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 AC113404.2-201ENST00000507884 177 ntBASIC18.05■□□□□ 0.48
SKA1Q96BD8 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 AC004263.2-201ENST00000617183 678 ntBASIC18.05■□□□□ 0.48
SKA1Q96BD8 REXO1L6P-202ENST00000619970 1078 ntBASIC18.05■□□□□ 0.48
SKA1Q96BD8 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SKA1Q96BD8 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.05■□□□□ 0.48
SKA1Q96BD8 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 AL096828.2-201ENST00000567259 1965 ntBASIC18.04■□□□□ 0.48
SKA1Q96BD8 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SKA1Q96BD8 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SKA1Q96BD8 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SKA1Q96BD8 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SKA1Q96BD8 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SKA1Q96BD8 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SKA1Q96BD8 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SKA1Q96BD8 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SKA1Q96BD8 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.04■□□□□ 0.48
SKA1Q96BD8 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SKA1Q96BD8 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.04■□□□□ 0.48
SKA1Q96BD8 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms