Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 AC009336.1-201ENST00000608941 1553 ntBASIC17.09■□□□□ 0.33
LMX1AQ8TE12 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.08■□□□□ 0.33
LMX1AQ8TE12 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 AC002558.1-201ENST00000488906 803 ntBASIC17.08■□□□□ 0.32
LMX1AQ8TE12 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1AQ8TE12 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 MYCLP1-201ENST00000372451 1075 ntBASIC17.07■□□□□ 0.32
LMX1AQ8TE12 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 IGHV3-65-201ENST00000523210 341 ntBASIC17.07■□□□□ 0.32
LMX1AQ8TE12 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 MTDHP5-201ENST00000598980 586 ntBASIC17.07■□□□□ 0.32
LMX1AQ8TE12 AC008667.4-201ENST00000607370 168 ntBASIC17.07■□□□□ 0.32
LMX1AQ8TE12 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 AC004790.2-201ENST00000623588 572 ntBASIC17.07■□□□□ 0.32
LMX1AQ8TE12 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LMX1AQ8TE12 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms