Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 PBK-203ENST00000522944 1499 ntTSL 2 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 AL596275.1-201ENST00000423464 877 ntBASIC13.51□□□□□ -0.25
HIST1H1AQ02539 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 AL023806.1-201ENST00000603994 1649 ntBASIC13.5□□□□□ -0.25
HIST1H1AQ02539 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 ECEL1P3-201ENST00000427961 737 ntBASIC13.5□□□□□ -0.25
HIST1H1AQ02539 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 HARS-201ENST00000307633 1780 ntTSL 2 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 AC068418.2-201ENST00000577309 3703 ntBASIC13.5□□□□□ -0.25
HIST1H1AQ02539 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIST1H1AQ02539 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 LIN28AP1-201ENST00000429574 405 ntBASIC13.49□□□□□ -0.25
HIST1H1AQ02539 ATP5G1P1-201ENST00000448724 379 ntBASIC13.49□□□□□ -0.25
HIST1H1AQ02539 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC13.49□□□□□ -0.25
HIST1H1AQ02539 AL157888.1-201ENST00000631930 593 ntBASIC13.49□□□□□ -0.25
HIST1H1AQ02539 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms