Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.54□□□□□ -0.4
PRKDCP78527 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 RAB34-223ENST00000636154 730 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
PRKDCP78527 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.54□□□□□ -0.4
PRKDCP78527 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC12.54□□□□□ -0.4
PRKDCP78527 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC12.54□□□□□ -0.4
PRKDCP78527 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 CHCHD2P3-201ENST00000603038 451 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 TUBB1P2-201ENST00000422712 1306 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 TUBB1P1-201ENST00000503144 1300 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC12.54□□□□□ -0.4
PRKDCP78527 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC12.54□□□□□ -0.4
PRKDCP78527 AC020907.1-201ENST00000616460 1350 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
PRKDCP78527 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 SPDYE18-201ENST00000510091 1050 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 AC109635.5-201ENST00000533593 962 ntBASIC12.54□□□□□ -0.4
PRKDCP78527 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC12.54□□□□□ -0.4
PRKDCP78527 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC12.54□□□□□ -0.4
PRKDCP78527 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.53□□□□□ -0.4
PRKDCP78527 GNAQP1-201ENST00000444815 1067 ntBASIC12.53□□□□□ -0.4
PRKDCP78527 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC12.53□□□□□ -0.4
PRKDCP78527 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC12.53□□□□□ -0.4
PRKDCP78527 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
PRKDCP78527 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.53□□□□□ -0.4
PRKDCP78527 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC12.53□□□□□ -0.4
PRKDCP78527 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.53□□□□□ -0.4
PRKDCP78527 AL512343.1-201ENST00000605837 169 ntBASIC12.53□□□□□ -0.4
PRKDCP78527 PFAS-212ENST00000625942 396 ntTSL 5 BASIC12.53□□□□□ -0.4
PRKDCP78527 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC12.53□□□□□ -0.4
PRKDCP78527 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
PRKDCP78527 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC12.53□□□□□ -0.4
PRKDCP78527 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC12.53□□□□□ -0.4
PRKDCP78527 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
PRKDCP78527 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
PRKDCP78527 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
PRKDCP78527 MIR1908-201ENST00000410394 80 ntBASIC12.53□□□□□ -0.4
PRKDCP78527 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PRKDCP78527 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
PRKDCP78527 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
PRKDCP78527 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
PRKDCP78527 MIR663B-201ENST00000408361 115 ntBASIC12.52□□□□□ -0.4
PRKDCP78527 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC12.52□□□□□ -0.4
PRKDCP78527 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.4
PRKDCP78527 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
PRKDCP78527 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
PRKDCP78527 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
PRKDCP78527 AC093677.2-201ENST00000600169 1863 ntBASIC12.52□□□□□ -0.4
PRKDCP78527 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
PRKDCP78527 AL391825.1-201ENST00000457671 1364 ntBASIC12.52□□□□□ -0.4
PRKDCP78527 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
PRKDCP78527 COX5BP2-201ENST00000392354 334 ntBASIC12.52□□□□□ -0.4
PRKDCP78527 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC12.52□□□□□ -0.4
PRKDCP78527 AC027369.6-201ENST00000525520 931 ntBASIC12.52□□□□□ -0.4
PRKDCP78527 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC12.52□□□□□ -0.41
PRKDCP78527 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
PRKDCP78527 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms