Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SRP54P61011 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.34■□□□□ 0.37
SRP54P61011 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.34■□□□□ 0.37
SRP54P61011 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.34■□□□□ 0.37
SRP54P61011 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.34■□□□□ 0.37
SRP54P61011 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 MIR574-201ENST00000385209 96 ntBASIC17.34■□□□□ 0.37
SRP54P61011 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.34■□□□□ 0.37
SRP54P61011 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 PMS2P1-201ENST00000431037 1228 ntBASIC17.34■□□□□ 0.37
SRP54P61011 DDX43P3-201ENST00000441064 443 ntBASIC17.34■□□□□ 0.37
SRP54P61011 AC092910.1-201ENST00000482027 1129 ntBASIC17.34■□□□□ 0.37
SRP54P61011 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 AC012640.2-201ENST00000561606 901 ntBASIC17.34■□□□□ 0.37
SRP54P61011 AC106730.1-201ENST00000566722 1090 ntBASIC17.34■□□□□ 0.37
SRP54P61011 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.34■□□□□ 0.37
SRP54P61011 AL353593.2-201ENST00000602529 1483 ntBASIC17.34■□□□□ 0.37
SRP54P61011 AL671883.3-201ENST00000603274 991 ntBASIC17.34■□□□□ 0.37
SRP54P61011 AL049757.1-201ENST00000616842 1596 ntBASIC17.34■□□□□ 0.37
SRP54P61011 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 AC008735.5-201ENST00000623544 497 ntBASIC17.34■□□□□ 0.37
SRP54P61011 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.34■□□□□ 0.37
SRP54P61011 BX276092.7-203ENST00000637198 1536 ntBASIC17.34■□□□□ 0.37
SRP54P61011 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SRP54P61011 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.34■□□□□ 0.37
SRP54P61011 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
SRP54P61011 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SRP54P61011 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
SRP54P61011 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SRP54P61011 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SRP54P61011 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.33■□□□□ 0.37
SRP54P61011 AC004817.3-201ENST00000602957 2129 ntBASIC17.33■□□□□ 0.37
SRP54P61011 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SRP54P61011 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
SRP54P61011 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SRP54P61011 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.33■□□□□ 0.37
SRP54P61011 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SRP54P61011 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.33■□□□□ 0.37
SRP54P61011 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SRP54P61011 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SRP54P61011 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.33■□□□□ 0.37
SRP54P61011 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
SRP54P61011 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.33■□□□□ 0.37
SRP54P61011 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
SRP54P61011 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 SIGLEC16-201ENST00000599858 1437 ntBASIC17.33■□□□□ 0.36
SRP54P61011 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.33■□□□□ 0.36
SRP54P61011 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.33■□□□□ 0.36
SRP54P61011 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.33■□□□□ 0.36
SRP54P61011 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.33■□□□□ 0.36
SRP54P61011 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.33■□□□□ 0.36
SRP54P61011 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.33■□□□□ 0.36
SRP54P61011 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.33■□□□□ 0.36
SRP54P61011 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.33■□□□□ 0.36
SRP54P61011 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.33■□□□□ 0.36
SRP54P61011 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.36
SRP54P61011 AC009113.1-201ENST00000570267 2443 ntBASIC17.33■□□□□ 0.36
SRP54P61011 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SRP54P61011 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SRP54P61011 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SRP54P61011 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SRP54P61011 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.32■□□□□ 0.36
SRP54P61011 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.32■□□□□ 0.36
SRP54P61011 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.32■□□□□ 0.36
SRP54P61011 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SRP54P61011 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SRP54P61011 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.32■□□□□ 0.36
SRP54P61011 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.32■□□□□ 0.36
SRP54P61011 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.32■□□□□ 0.36
SRP54P61011 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms