Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC21.15■□□□□ 0.98
BRCA1P38398 AC005332.7-201ENST00000614046 2005 ntBASIC21.15■□□□□ 0.98
BRCA1P38398 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.15■□□□□ 0.98
BRCA1P38398 PCDHAC2-203ENST00000615316 3011 ntBASIC21.15■□□□□ 0.98
BRCA1P38398 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
BRCA1P38398 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC21.15■□□□□ 0.98
BRCA1P38398 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 AC073592.8-201ENST00000624126 511 ntBASIC21.15■□□□□ 0.98
BRCA1P38398 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.15■□□□□ 0.98
BRCA1P38398 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.15■□□□□ 0.98
BRCA1P38398 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
BRCA1P38398 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC21.14■□□□□ 0.98
BRCA1P38398 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
BRCA1P38398 AL096828.2-201ENST00000567259 1965 ntBASIC21.14■□□□□ 0.97
BRCA1P38398 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BRCA1P38398 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
BRCA1P38398 SPTLC1P1-201ENST00000447199 261 ntBASIC21.14■□□□□ 0.97
BRCA1P38398 GPR53P-205ENST00000457298 1084 ntBASIC21.14■□□□□ 0.97
BRCA1P38398 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC21.14■□□□□ 0.97
BRCA1P38398 AP000842.3-202ENST00000569238 1080 ntBASIC21.14■□□□□ 0.97
BRCA1P38398 AC004840.1-201ENST00000636359 365 ntBASIC21.14■□□□□ 0.97
BRCA1P38398 AC093677.2-201ENST00000600169 1863 ntBASIC21.14■□□□□ 0.97
BRCA1P38398 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
BRCA1P38398 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
BRCA1P38398 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
BRCA1P38398 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BRCA1P38398 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC21.14■□□□□ 0.97
BRCA1P38398 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
BRCA1P38398 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.14■□□□□ 0.97
BRCA1P38398 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.14■□□□□ 0.97
BRCA1P38398 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
BRCA1P38398 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC21.13■□□□□ 0.97
BRCA1P38398 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC21.13■□□□□ 0.97
BRCA1P38398 SPDYE12P-201ENST00000618416 771 ntBASIC21.13■□□□□ 0.97
BRCA1P38398 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.13■□□□□ 0.97
BRCA1P38398 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.13■□□□□ 0.97
BRCA1P38398 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.13■□□□□ 0.97
BRCA1P38398 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 AL135999.2-201ENST00000622438 1686 ntBASIC21.13■□□□□ 0.97
BRCA1P38398 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 PGF-202ENST00000405431 666 ntTSL 5 BASIC21.13■□□□□ 0.97
BRCA1P38398 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
BRCA1P38398 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC21.13■□□□□ 0.97
BRCA1P38398 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC21.13■□□□□ 0.97
BRCA1P38398 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC21.13■□□□□ 0.97
BRCA1P38398 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
BRCA1P38398 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.13■□□□□ 0.97
BRCA1P38398 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.13■□□□□ 0.97
BRCA1P38398 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BRCA1P38398 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
BRCA1P38398 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC21.12■□□□□ 0.97
BRCA1P38398 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
BRCA1P38398 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
BRCA1P38398 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.12■□□□□ 0.97
BRCA1P38398 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
BRCA1P38398 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRCA1P38398 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC21.11■□□□□ 0.97
BRCA1P38398 GIMAP3P-201ENST00000495150 836 ntBASIC21.11■□□□□ 0.97
BRCA1P38398 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
BRCA1P38398 MIR4515-201ENST00000584082 81 ntBASIC21.11■□□□□ 0.97
BRCA1P38398 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC21.11■□□□□ 0.97
BRCA1P38398 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC21.11■□□□□ 0.97
BRCA1P38398 HMGA1P7-201ENST00000406908 502 ntBASIC21.11■□□□□ 0.97
BRCA1P38398 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC21.11■□□□□ 0.97
BRCA1P38398 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC21.11■□□□□ 0.97
BRCA1P38398 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms