Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.13■□□□□ 0.81
SMARCA1P28370 OR7E14P-202ENST00000530490 1290 ntBASIC20.13■□□□□ 0.81
SMARCA1P28370 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.13■□□□□ 0.81
SMARCA1P28370 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SMARCA1P28370 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.13■□□□□ 0.81
SMARCA1P28370 AC067852.2-201ENST00000590513 2313 ntBASIC20.13■□□□□ 0.81
SMARCA1P28370 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.13■□□□□ 0.81
SMARCA1P28370 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SMARCA1P28370 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
SMARCA1P28370 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SMARCA1P28370 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 AL133373.2-201ENST00000623187 2828 ntBASIC20.12■□□□□ 0.81
SMARCA1P28370 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SMARCA1P28370 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.12■□□□□ 0.81
SMARCA1P28370 RPS2P1-201ENST00000434010 821 ntBASIC20.12■□□□□ 0.81
SMARCA1P28370 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.12■□□□□ 0.81
SMARCA1P28370 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.12■□□□□ 0.81
SMARCA1P28370 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.12■□□□□ 0.81
SMARCA1P28370 AC004706.3-202ENST00000621574 984 ntBASIC20.12■□□□□ 0.81
SMARCA1P28370 FAM215A-202ENST00000632077 792 ntBASIC20.12■□□□□ 0.81
SMARCA1P28370 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.12■□□□□ 0.81
SMARCA1P28370 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.12■□□□□ 0.81
SMARCA1P28370 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.12■□□□□ 0.81
SMARCA1P28370 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.12■□□□□ 0.81
SMARCA1P28370 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMARCA1P28370 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SMARCA1P28370 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
SMARCA1P28370 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 KRT18P27-201ENST00000427733 1299 ntBASIC20.11■□□□□ 0.81
SMARCA1P28370 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.11■□□□□ 0.81
SMARCA1P28370 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.11■□□□□ 0.81
SMARCA1P28370 AP001005.1-201ENST00000571755 1248 ntBASIC20.11■□□□□ 0.81
SMARCA1P28370 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.11■□□□□ 0.81
SMARCA1P28370 AC008735.5-201ENST00000623544 497 ntBASIC20.11■□□□□ 0.81
SMARCA1P28370 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.11■□□□□ 0.81
SMARCA1P28370 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
SMARCA1P28370 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.11■□□□□ 0.81
SMARCA1P28370 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.11■□□□□ 0.81
SMARCA1P28370 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMARCA1P28370 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.1■□□□□ 0.81
SMARCA1P28370 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMARCA1P28370 AC097637.2-201ENST00000624096 1997 ntBASIC20.1■□□□□ 0.81
SMARCA1P28370 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.1■□□□□ 0.81
SMARCA1P28370 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMARCA1P28370 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.1■□□□□ 0.81
SMARCA1P28370 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.1■□□□□ 0.81
SMARCA1P28370 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.1■□□□□ 0.81
SMARCA1P28370 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.1■□□□□ 0.81
SMARCA1P28370 AC006557.2-201ENST00000592985 1240 ntBASIC20.1■□□□□ 0.81
SMARCA1P28370 AL353135.1-201ENST00000606729 504 ntBASIC20.1■□□□□ 0.81
SMARCA1P28370 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.1■□□□□ 0.81
SMARCA1P28370 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.1■□□□□ 0.81
SMARCA1P28370 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMARCA1P28370 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMARCA1P28370 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMARCA1P28370 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMARCA1P28370 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMARCA1P28370 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.1■□□□□ 0.81
SMARCA1P28370 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SMARCA1P28370 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.1■□□□□ 0.81
SMARCA1P28370 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMARCA1P28370 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMARCA1P28370 LINC00896-202ENST00000609602 2128 ntBASIC20.09■□□□□ 0.81
SMARCA1P28370 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.09■□□□□ 0.81
SMARCA1P28370 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
SMARCA1P28370 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCA1P28370 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SMARCA1P28370 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SMARCA1P28370 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCA1P28370 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SMARCA1P28370 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCA1P28370 LINC00982-205ENST00000420957 435 ntBASIC20.09■□□□□ 0.81
SMARCA1P28370 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCA1P28370 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.09■□□□□ 0.81
SMARCA1P28370 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.09■□□□□ 0.81
SMARCA1P28370 AL139424.1-201ENST00000607572 797 ntBASIC20.09■□□□□ 0.81
SMARCA1P28370 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.09■□□□□ 0.81
SMARCA1P28370 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCA1P28370 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SMARCA1P28370 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms