Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
COL8A1P27658 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.32■□□□□ 0.04
COL8A1P27658 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL8A1P27658 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL8A1P27658 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL8A1P27658 AP000974.1-201ENST00000623909 2387 ntBASIC15.32■□□□□ 0.04
COL8A1P27658 AC148477.5-201ENST00000625164 1645 ntBASIC15.32■□□□□ 0.04
COL8A1P27658 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL8A1P27658 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL8A1P27658 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
COL8A1P27658 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL8A1P27658 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.31■□□□□ 0.04
COL8A1P27658 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
COL8A1P27658 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC15.31■□□□□ 0.04
COL8A1P27658 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.31■□□□□ 0.04
COL8A1P27658 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 AL158211.5-201ENST00000623583 2518 ntBASIC15.31■□□□□ 0.04
COL8A1P27658 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.31■□□□□ 0.04
COL8A1P27658 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.31■□□□□ 0.04
COL8A1P27658 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.31■□□□□ 0.04
COL8A1P27658 AL020989.1-201ENST00000422979 469 ntBASIC15.31■□□□□ 0.04
COL8A1P27658 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.31■□□□□ 0.04
COL8A1P27658 TIMM8BP1-201ENST00000452384 211 ntBASIC15.31■□□□□ 0.04
COL8A1P27658 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.31■□□□□ 0.04
COL8A1P27658 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.31■□□□□ 0.04
COL8A1P27658 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.31■□□□□ 0.04
COL8A1P27658 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.31■□□□□ 0.04
COL8A1P27658 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 OR7E47P-204ENST00000575924 449 ntBASIC15.31■□□□□ 0.04
COL8A1P27658 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.31■□□□□ 0.04
COL8A1P27658 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.31■□□□□ 0.04
COL8A1P27658 REXO1L3P-201ENST00000622202 1288 ntBASIC15.31■□□□□ 0.04
COL8A1P27658 AC007064.4-201ENST00000637740 555 ntBASIC15.31■□□□□ 0.04
COL8A1P27658 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.31■□□□□ 0.04
COL8A1P27658 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.31■□□□□ 0.04
COL8A1P27658 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL8A1P27658 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.31■□□□□ 0.04
COL8A1P27658 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 AC141586.3-201ENST00000562166 1838 ntBASIC15.31■□□□□ 0.04
COL8A1P27658 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.31■□□□□ 0.04
COL8A1P27658 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL8A1P27658 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL8A1P27658 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
COL8A1P27658 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.3■□□□□ 0.04
COL8A1P27658 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.3■□□□□ 0.04
COL8A1P27658 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL8A1P27658 AP002414.1-201ENST00000391405 1147 ntBASIC15.3■□□□□ 0.04
COL8A1P27658 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.3■□□□□ 0.04
COL8A1P27658 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.3■□□□□ 0.04
COL8A1P27658 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.3■□□□□ 0.04
COL8A1P27658 NCF1C-201ENST00000438382 1427 ntBASIC15.3■□□□□ 0.04
COL8A1P27658 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.3■□□□□ 0.04
COL8A1P27658 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.3■□□□□ 0.04
COL8A1P27658 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
COL8A1P27658 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.3■□□□□ 0.04
COL8A1P27658 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.3■□□□□ 0.04
COL8A1P27658 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.3■□□□□ 0.04
COL8A1P27658 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.3■□□□□ 0.04
COL8A1P27658 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 AC008761.3-201ENST00000624803 892 ntBASIC15.3■□□□□ 0.04
COL8A1P27658 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
COL8A1P27658 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL8A1P27658 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
COL8A1P27658 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
COL8A1P27658 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL8A1P27658 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.29■□□□□ 0.04
COL8A1P27658 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL8A1P27658 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC15.29■□□□□ 0.04
COL8A1P27658 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 AL121761.2-201ENST00000598007 1648 ntBASIC15.29■□□□□ 0.04
COL8A1P27658 AC092919.2-201ENST00000623631 1645 ntBASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms