Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.33■□□□□ 0.85
ERCC3P19447 AC112482.1-201ENST00000492080 688 ntBASIC20.33■□□□□ 0.85
ERCC3P19447 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.33■□□□□ 0.85
ERCC3P19447 AC006557.2-201ENST00000592985 1240 ntBASIC20.33■□□□□ 0.85
ERCC3P19447 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
ERCC3P19447 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.33■□□□□ 0.85
ERCC3P19447 MIR1199-201ENST00000621445 119 ntBASIC20.33■□□□□ 0.85
ERCC3P19447 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
ERCC3P19447 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ERCC3P19447 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
ERCC3P19447 SIGLEC16-201ENST00000599858 1437 ntBASIC20.33■□□□□ 0.84
ERCC3P19447 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.33■□□□□ 0.84
ERCC3P19447 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ERCC3P19447 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.84
ERCC3P19447 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.33■□□□□ 0.84
ERCC3P19447 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
ERCC3P19447 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ERCC3P19447 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ERCC3P19447 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 AC135776.1-201ENST00000319817 2481 ntBASIC20.32■□□□□ 0.84
ERCC3P19447 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.32■□□□□ 0.84
ERCC3P19447 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.32■□□□□ 0.84
ERCC3P19447 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
ERCC3P19447 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
ERCC3P19447 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ERCC3P19447 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.32■□□□□ 0.84
ERCC3P19447 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.32■□□□□ 0.84
ERCC3P19447 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.32■□□□□ 0.84
ERCC3P19447 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.32■□□□□ 0.84
ERCC3P19447 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.32■□□□□ 0.84
ERCC3P19447 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.32■□□□□ 0.84
ERCC3P19447 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
ERCC3P19447 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
ERCC3P19447 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ERCC3P19447 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC3P19447 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
ERCC3P19447 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.31■□□□□ 0.84
ERCC3P19447 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.31■□□□□ 0.84
ERCC3P19447 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
ERCC3P19447 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.31■□□□□ 0.84
ERCC3P19447 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.31■□□□□ 0.84
ERCC3P19447 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.31■□□□□ 0.84
ERCC3P19447 COX5BP2-201ENST00000392354 334 ntBASIC20.31■□□□□ 0.84
ERCC3P19447 AC103564.2-201ENST00000432853 1299 ntBASIC20.31■□□□□ 0.84
ERCC3P19447 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
ERCC3P19447 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.31■□□□□ 0.84
ERCC3P19447 DUTP2-201ENST00000519164 463 ntBASIC20.31■□□□□ 0.84
ERCC3P19447 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.31■□□□□ 0.84
ERCC3P19447 AC073592.5-201ENST00000624854 528 ntBASIC20.31■□□□□ 0.84
ERCC3P19447 AC005593.1-201ENST00000624894 515 ntBASIC20.31■□□□□ 0.84
ERCC3P19447 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.31■□□□□ 0.84
ERCC3P19447 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
ERCC3P19447 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
ERCC3P19447 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
ERCC3P19447 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC3P19447 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
ERCC3P19447 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC3P19447 AL354751.1-201ENST00000412768 1863 ntBASIC20.3■□□□□ 0.84
ERCC3P19447 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.3■□□□□ 0.84
ERCC3P19447 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.3■□□□□ 0.84
ERCC3P19447 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.3■□□□□ 0.84
ERCC3P19447 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC3P19447 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC3P19447 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.3■□□□□ 0.84
ERCC3P19447 DNAJB3-201ENST00000446806 729 ntBASIC20.3■□□□□ 0.84
ERCC3P19447 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.3■□□□□ 0.84
ERCC3P19447 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.3■□□□□ 0.84
ERCC3P19447 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.3■□□□□ 0.84
ERCC3P19447 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.3■□□□□ 0.84
ERCC3P19447 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.3■□□□□ 0.84
ERCC3P19447 MIR3687-2-201ENST00000577708 61 ntBASIC20.3■□□□□ 0.84
ERCC3P19447 MIR3687-1-201ENST00000614492 61 ntBASIC20.3■□□□□ 0.84
ERCC3P19447 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.3■□□□□ 0.84
ERCC3P19447 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
ERCC3P19447 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC3P19447 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
ERCC3P19447 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC3P19447 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms