Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTDNEP1O95476 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTDNEP1O95476 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTDNEP1O95476 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTDNEP1O95476 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTDNEP1O95476 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CTDNEP1O95476 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CTDNEP1O95476 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CTDNEP1O95476 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 AC074051.2-201ENST00000565115 352 ntBASIC20.33■□□□□ 0.85
CTDNEP1O95476 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.33■□□□□ 0.85
CTDNEP1O95476 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CTDNEP1O95476 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CTDNEP1O95476 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CTDNEP1O95476 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CTDNEP1O95476 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CTDNEP1O95476 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
CTDNEP1O95476 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CTDNEP1O95476 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CTDNEP1O95476 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
CTDNEP1O95476 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 AIRN-201ENST00000601203 4374 ntBASIC20.32■□□□□ 0.84
CTDNEP1O95476 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 AD000864.1-201ENST00000624076 2295 ntBASIC20.32■□□□□ 0.84
CTDNEP1O95476 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 MYCLP1-201ENST00000372451 1075 ntBASIC20.32■□□□□ 0.84
CTDNEP1O95476 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 AP000867.3-201ENST00000524675 377 ntBASIC20.32■□□□□ 0.84
CTDNEP1O95476 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CTDNEP1O95476 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTDNEP1O95476 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 AC096582.2-201ENST00000510860 516 ntBASIC20.31■□□□□ 0.84
CTDNEP1O95476 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 AC092053.1-201ENST00000605787 1936 ntBASIC20.31■□□□□ 0.84
CTDNEP1O95476 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTDNEP1O95476 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.31■□□□□ 0.84
CTDNEP1O95476 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms