Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AL138831.2-201ENST00000606564 490 ntBASIC16.87■□□□□ 0.29
SEMA3DO95025 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SEMA3DO95025 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.87■□□□□ 0.29
SEMA3DO95025 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SEMA3DO95025 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.87■□□□□ 0.29
SEMA3DO95025 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SEMA3DO95025 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SEMA3DO95025 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SEMA3DO95025 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SEMA3DO95025 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.87■□□□□ 0.29
SEMA3DO95025 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SEMA3DO95025 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.87■□□□□ 0.29
SEMA3DO95025 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SEMA3DO95025 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
SEMA3DO95025 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.87■□□□□ 0.29
SEMA3DO95025 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SEMA3DO95025 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SEMA3DO95025 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SEMA3DO95025 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 OR6D1P-202ENST00000641007 5290 ntBASIC16.86■□□□□ 0.29
SEMA3DO95025 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.86■□□□□ 0.29
SEMA3DO95025 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SEMA3DO95025 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
SEMA3DO95025 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 PCED1CP-201ENST00000419887 785 ntBASIC16.86■□□□□ 0.29
SEMA3DO95025 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.86■□□□□ 0.29
SEMA3DO95025 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.86■□□□□ 0.29
SEMA3DO95025 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.86■□□□□ 0.29
SEMA3DO95025 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.86■□□□□ 0.29
SEMA3DO95025 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.86■□□□□ 0.29
SEMA3DO95025 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
SEMA3DO95025 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.86■□□□□ 0.29
SEMA3DO95025 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.86■□□□□ 0.29
SEMA3DO95025 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.86■□□□□ 0.29
SEMA3DO95025 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.86■□□□□ 0.29
SEMA3DO95025 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
SEMA3DO95025 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.86■□□□□ 0.29
SEMA3DO95025 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.86■□□□□ 0.29
SEMA3DO95025 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SEMA3DO95025 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SEMA3DO95025 PCDHA12-202ENST00000613593 2588 ntBASIC16.85■□□□□ 0.29
SEMA3DO95025 AC010460.3-201ENST00000511359 1579 ntBASIC16.85■□□□□ 0.29
SEMA3DO95025 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.85■□□□□ 0.29
SEMA3DO95025 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SEMA3DO95025 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.85■□□□□ 0.29
SEMA3DO95025 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.85■□□□□ 0.29
SEMA3DO95025 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.85■□□□□ 0.29
SEMA3DO95025 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.85■□□□□ 0.29
SEMA3DO95025 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.85■□□□□ 0.29
SEMA3DO95025 IER3-202ENST00000376377 1350 ntBASIC16.85■□□□□ 0.29
SEMA3DO95025 AC016734.2-201ENST00000624325 1377 ntBASIC16.85■□□□□ 0.29
SEMA3DO95025 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.85■□□□□ 0.29
SEMA3DO95025 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SEMA3DO95025 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.85■□□□□ 0.29
SEMA3DO95025 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.85■□□□□ 0.29
SEMA3DO95025 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.85■□□□□ 0.29
SEMA3DO95025 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.85■□□□□ 0.29
SEMA3DO95025 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms