Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
HMGB3O15347 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.19□□□□□ -0.14
HMGB3O15347 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 CDCA4P2-201ENST00000441182 718 ntBASIC14.19□□□□□ -0.14
HMGB3O15347 GLRB-205ENST00000512619 728 ntTSL 3 BASIC14.19□□□□□ -0.14
HMGB3O15347 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC14.19□□□□□ -0.14
HMGB3O15347 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.19□□□□□ -0.14
HMGB3O15347 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HMGB3O15347 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
HMGB3O15347 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC14.19□□□□□ -0.14
HMGB3O15347 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.19□□□□□ -0.14
HMGB3O15347 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC14.19□□□□□ -0.14
HMGB3O15347 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.19□□□□□ -0.14
HMGB3O15347 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
HMGB3O15347 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC14.18□□□□□ -0.14
HMGB3O15347 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 AC105020.1-201ENST00000435356 2205 ntBASIC14.18□□□□□ -0.14
HMGB3O15347 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 LINC02199-201ENST00000506655 2702 ntBASIC14.18□□□□□ -0.14
HMGB3O15347 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
HMGB3O15347 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 AP000593.1-201ENST00000393668 712 ntBASIC14.18□□□□□ -0.14
HMGB3O15347 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC14.18□□□□□ -0.14
HMGB3O15347 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC14.18□□□□□ -0.14
HMGB3O15347 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC14.18□□□□□ -0.14
HMGB3O15347 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
HMGB3O15347 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC14.18□□□□□ -0.14
HMGB3O15347 MYC-209ENST00000641252 345 ntBASIC14.18□□□□□ -0.14
HMGB3O15347 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HMGB3O15347 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.18□□□□□ -0.14
HMGB3O15347 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HMGB3O15347 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC14.18□□□□□ -0.14
HMGB3O15347 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
HMGB3O15347 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HMGB3O15347 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.18□□□□□ -0.14
HMGB3O15347 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC14.17□□□□□ -0.14
HMGB3O15347 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
HMGB3O15347 AL109659.2-201ENST00000606809 1674 ntBASIC14.17□□□□□ -0.14
HMGB3O15347 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
HMGB3O15347 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
HMGB3O15347 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms