Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX4O14627 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX4O14627 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX4O14627 AL008721.1-201ENST00000609964 604 ntBASIC16.82■□□□□ 0.28
CDX4O14627 AC116407.2-201ENST00000613639 860 ntBASIC16.82■□□□□ 0.28
CDX4O14627 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX4O14627 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX4O14627 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX4O14627 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX4O14627 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX4O14627 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX4O14627 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX4O14627 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX4O14627 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX4O14627 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.82■□□□□ 0.28
CDX4O14627 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.81■□□□□ 0.28
CDX4O14627 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 AC129492.6-201ENST00000611383 1305 ntBASIC16.81■□□□□ 0.28
CDX4O14627 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.81■□□□□ 0.28
CDX4O14627 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.81■□□□□ 0.28
CDX4O14627 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.81■□□□□ 0.28
CDX4O14627 RBPMS2P1-201ENST00000437762 623 ntBASIC16.81■□□□□ 0.28
CDX4O14627 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.81■□□□□ 0.28
CDX4O14627 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.81■□□□□ 0.28
CDX4O14627 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.81■□□□□ 0.28
CDX4O14627 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.81■□□□□ 0.28
CDX4O14627 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CDX4O14627 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.81■□□□□ 0.28
CDX4O14627 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CDX4O14627 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CDX4O14627 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.81■□□□□ 0.28
CDX4O14627 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX4O14627 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CDX4O14627 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX4O14627 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX4O14627 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.8■□□□□ 0.28
CDX4O14627 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.8■□□□□ 0.28
CDX4O14627 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX4O14627 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.8■□□□□ 0.28
CDX4O14627 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX4O14627 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.8■□□□□ 0.28
CDX4O14627 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX4O14627 AL135744.1-201ENST00000565098 629 ntBASIC16.8■□□□□ 0.28
CDX4O14627 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.8■□□□□ 0.28
CDX4O14627 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.8■□□□□ 0.28
CDX4O14627 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.8■□□□□ 0.28
CDX4O14627 AL390754.1-201ENST00000619088 582 ntBASIC16.8■□□□□ 0.28
CDX4O14627 AC008677.1-201ENST00000519230 1561 ntBASIC16.8■□□□□ 0.28
CDX4O14627 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CDX4O14627 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX4O14627 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.79■□□□□ 0.28
CDX4O14627 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
CDX4O14627 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX4O14627 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CDX4O14627 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 MYCLP1-201ENST00000372451 1075 ntBASIC16.79■□□□□ 0.28
CDX4O14627 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.79■□□□□ 0.28
CDX4O14627 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX4O14627 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.79■□□□□ 0.28
CDX4O14627 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX4O14627 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.79■□□□□ 0.28
CDX4O14627 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.79■□□□□ 0.28
CDX4O14627 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX4O14627 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.79■□□□□ 0.28
CDX4O14627 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX4O14627 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.79■□□□□ 0.28
CDX4O14627 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
CDX4O14627 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX4O14627 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms