Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC005336.2-201ENST00000593183 939 ntBASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC011467.2-201ENST00000598425 242 ntBASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 AL138831.2-201ENST00000606564 490 ntBASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 INTS4P1-201ENST00000438455 1935 ntBASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TMX2-CTNND1H3BSU7 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 PMS2P7-201ENST00000506558 1336 ntBASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 RPL13AP23-201ENST00000480739 586 ntBASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 TERC-201ENST00000602385 541 ntBASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.28■□□□□ 0.36
TMX2-CTNND1H3BSU7 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 AL024508.2-201ENST00000607749 1894 ntBASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TMX2-CTNND1H3BSU7 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms