Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA11Q9Y5H2 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 AL049597.2-201ENST00000565575 961 ntBASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 AL138688.1-201ENST00000624851 1594 ntBASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA11Q9Y5H2 REXO1L11P-201ENST00000620964 1927 ntBASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 TSPY22P-201ENST00000427496 604 ntBASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
PCDHGA11Q9Y5H2 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.08■□□□□ 0.33
PCDHGA11Q9Y5H2 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms